SRR2936805.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936805.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	83528
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	547	0.6548702231587012	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	317	0.3795134565654631	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	127	0.15204482329278804	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	126	0.15084761995977397	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	116	0.13887558662963317	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	86	0.1029594866392108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGGG	25	3.8597056E-5	45.000004	3
ATAGGGC	25	3.8597056E-5	45.000004	5
AATCTAC	25	3.8597056E-5	45.000004	17
CGTTTTA	135	0.0	45.000004	1
GTACGGG	50	2.1827873E-11	45.000004	3
TATCATC	20	6.9957256E-4	45.0	33
GTTTAGG	20	6.9957256E-4	45.0	3
TATGGAG	20	6.9957256E-4	45.0	2
GCTATCA	20	6.9957256E-4	45.0	31
TACGGGA	20	6.9957256E-4	45.0	4
AGACAAG	20	6.9957256E-4	45.0	2
GTTCAGA	20	6.9957256E-4	45.0	1
TAAGGAT	20	6.9957256E-4	45.0	5
AGCTATC	20	6.9957256E-4	45.0	30
GGCGATG	20	6.9957256E-4	45.0	8
CATCCAA	20	6.9957256E-4	45.0	36
TGACTTG	20	6.9957256E-4	45.0	20
CTGTGGG	20	6.9957256E-4	45.0	3
TACCCAT	30	2.1413216E-6	44.999996	17
AAGACGC	30	2.1413216E-6	44.999996	39