##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936777.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 499836 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.834827823526116 31.0 31.0 34.0 30.0 34.0 2 31.909418289198857 33.0 31.0 34.0 30.0 34.0 3 31.779439656207234 33.0 31.0 34.0 30.0 34.0 4 35.546721324594465 37.0 35.0 37.0 33.0 37.0 5 31.025602397586407 37.0 35.0 37.0 0.0 37.0 6 33.25912699365392 37.0 35.0 37.0 17.0 37.0 7 35.136400739442536 37.0 35.0 37.0 32.0 37.0 8 35.51007530469994 37.0 35.0 37.0 33.0 37.0 9 37.51079554093743 39.0 37.0 39.0 35.0 39.0 10 37.255261725846076 39.0 37.0 39.0 34.0 39.0 11 37.07141542425916 39.0 37.0 39.0 33.0 39.0 12 37.06907865779976 39.0 37.0 39.0 33.0 39.0 13 36.98034755399771 39.0 37.0 39.0 33.0 39.0 14 38.19057050712634 40.0 37.0 41.0 33.0 41.0 15 38.153208252306754 40.0 37.0 41.0 33.0 41.0 16 38.16160100512968 40.0 37.0 41.0 33.0 41.0 17 38.12003937291431 40.0 37.0 41.0 33.0 41.0 18 37.98120983682648 40.0 37.0 41.0 33.0 41.0 19 37.928228458934534 40.0 37.0 41.0 33.0 41.0 20 37.93019910530654 40.0 36.0 41.0 33.0 41.0 21 37.92655190902616 40.0 36.0 41.0 33.0 41.0 22 37.950173656959485 40.0 36.0 41.0 33.0 41.0 23 37.98698173000744 40.0 37.0 41.0 34.0 41.0 24 37.9480749685897 40.0 36.0 41.0 33.0 41.0 25 37.82050712633744 40.0 36.0 41.0 33.0 41.0 26 37.75618202770509 40.0 36.0 41.0 33.0 41.0 27 37.71917588969182 40.0 36.0 41.0 33.0 41.0 28 37.63251346441633 40.0 36.0 41.0 33.0 41.0 29 37.59539729031122 40.0 36.0 41.0 33.0 41.0 30 37.51822997943325 40.0 36.0 41.0 33.0 41.0 31 37.32456845845437 39.0 36.0 41.0 32.0 41.0 32 37.229437255419775 39.0 35.0 41.0 32.0 41.0 33 37.146179947022624 39.0 35.0 41.0 31.0 41.0 34 37.01656743411839 39.0 35.0 41.0 31.0 41.0 35 36.99669691658864 39.0 35.0 41.0 31.0 41.0 36 36.775380324746514 39.0 35.0 41.0 30.0 41.0 37 36.71442433118063 39.0 35.0 41.0 30.0 41.0 38 36.567458126265414 39.0 35.0 41.0 30.0 41.0 39 36.581122608215495 39.0 35.0 41.0 30.0 41.0 40 36.60874366792308 39.0 35.0 41.0 30.0 41.0 41 36.56597163869749 39.0 35.0 41.0 30.0 41.0 42 36.50606198833217 39.0 35.0 41.0 30.0 41.0 43 36.37931841644059 39.0 35.0 40.0 30.0 41.0 44 36.2233352539633 39.0 35.0 40.0 30.0 41.0 45 36.1653322289711 39.0 35.0 40.0 29.0 41.0 46 35.9794532606695 39.0 35.0 40.0 28.0 41.0 47 35.8398934850631 38.0 35.0 40.0 28.0 41.0 48 35.6923510911579 38.0 35.0 40.0 27.0 41.0 49 35.580958554405846 38.0 35.0 40.0 27.0 41.0 50 35.37389063612865 38.0 34.0 40.0 26.0 41.0 51 33.44070455109276 36.0 31.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 11.0 9 22.0 10 19.0 11 17.0 12 9.0 13 13.0 14 12.0 15 19.0 16 35.0 17 62.0 18 143.0 19 250.0 20 395.0 21 694.0 22 1012.0 23 1563.0 24 2324.0 25 3327.0 26 4524.0 27 5299.0 28 6109.0 29 7386.0 30 9219.0 31 11876.0 32 15448.0 33 21583.0 34 31824.0 35 41363.0 36 43437.0 37 64414.0 38 100483.0 39 126917.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.76615529893805 20.362879024319977 24.41160700709833 11.459358669643644 2 30.693067326082957 29.531086196272376 24.282964812458484 15.49288166518618 3 29.209980873726582 28.742427516225323 27.63886554789971 14.408726062148386 4 25.66301746973007 24.14111828679807 33.48878432125737 16.707079922214486 5 23.81221040501284 36.549588264950906 22.89250874286766 16.74569258716859 6 23.89603790043134 35.74512440080346 26.80419177490217 13.554645923863026 7 74.26615930025048 5.194303731623973 14.8884834225626 5.651053545562944 8 73.43008506790227 8.160676701958243 12.264022599412607 6.145215630726878 9 67.37349850751046 7.240374842948487 13.134308053041396 12.251818596499652 10 35.477836730447585 28.465936827279346 21.353203850863085 14.703022591409983 11 24.35358797685641 23.6927712289631 30.840315623524518 21.113325170655976 12 22.23509311054026 21.447234692979297 34.26243807969014 22.055234116790306 13 21.68431245448507 23.601941436791268 37.3704575100633 17.34328859866036 14 19.23470898454693 28.658600020806823 30.81990893012908 21.286782064517162 15 16.229923414880083 26.585319984955063 39.18505269728471 17.999703902880146 16 18.536680031050185 28.617786634015957 30.069262718171558 22.776270616762297 17 19.54941220720396 26.424867356492932 30.609439896285984 23.416280540017127 18 19.24811338118903 27.341568034315255 32.8349698701174 20.575348714378315 19 19.508198689170047 28.437327443401433 29.88120103393913 22.173272833489385 20 20.241439192054994 28.827055274129915 32.043910402612056 18.88759513120303 21 19.796893381028976 30.196704519082257 31.960282972815087 18.04611912707368 22 18.45345273249626 24.75692026984851 30.91894141278339 25.87068558487184 23 17.670195824230348 28.188045678982704 31.658784081178627 22.48297441560832 24 20.726198193007306 24.193935610880366 30.296137132979617 24.783729063132707 25 18.119543210172935 31.632575484759002 28.12222408950136 22.125657215566704 26 19.394161284901447 27.007658511991934 29.406045182819966 24.192135020286653 27 21.874774926175785 28.201650141246326 27.980377563840943 21.943197368736946 28 17.42531550348514 25.21827159308253 33.620827631463115 23.735585271969207 29 23.65175777655071 24.60447026624733 28.95109595947471 22.792675997727255 30 23.316647860498243 25.977920758008626 30.645251642538753 20.060179738954375 31 22.215886810873968 25.87948847221889 29.1765699149321 22.72805480197505 32 22.433358141470404 29.6059107387223 28.01658944133676 19.94414167847054 33 20.965076545106793 24.240350835073905 31.102601653342298 23.691970966477005 34 21.739930697268704 23.3112460887171 31.020174617274463 23.92864859673973 35 21.06430909338263 23.819612833009227 32.01950239678615 23.096575676822 36 26.26221400619403 22.920317864259477 31.224241551228804 19.593226578317687 37 21.458638433406158 25.803063404796774 33.08785281572356 19.65044534607351 38 18.40703750830272 26.70515929224786 33.002224729711344 21.885578469738075 39 21.971406621371813 25.576589121231763 29.824982594290926 22.6270216631055 40 20.70659176209797 22.31671988412199 35.5374562856617 21.439232068118343 41 21.612889027601053 24.793532278587378 28.575172656631377 25.018406037180196 42 22.714650405332947 22.61921910386607 33.405757088324975 21.260373402476013 43 25.291495610560265 22.677038068486464 29.694539809057368 22.336926511895904 44 21.308789282884785 23.21861570595155 30.579830184300448 24.89276482686321 45 20.4335021887179 22.570403092214246 29.881000968317608 27.115093750750248 46 25.241279139557776 24.286165862402868 28.539761041621652 21.932793956417704 47 18.74954985235157 22.958530397970534 35.71591482006098 22.576004929616914 48 21.37841211917509 23.026552709288648 30.85231956081595 24.742715610720317 49 21.1747453164638 20.232036107843374 36.051224801734975 22.54199377395786 50 20.896654102545632 20.4419049448219 33.45277250938308 25.208668443249387 51 20.307860978400917 19.726670347874105 29.746957001896625 30.218511671828356 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 962.0 1 885.0 2 808.0 3 2341.5 4 3875.0 5 2639.5 6 1404.0 7 1213.5 8 1023.0 9 1068.5 10 1114.0 11 1063.0 12 1012.0 13 1000.5 14 989.0 15 974.0 16 959.0 17 1045.5 18 1132.0 19 1264.5 20 1397.0 21 1316.5 22 1236.0 23 1833.5 24 2431.0 25 2993.5 26 4459.5 27 5363.0 28 5918.0 29 6473.0 30 7703.5 31 8934.0 32 9379.0 33 9824.0 34 12195.0 35 14566.0 36 15592.5 37 16619.0 38 18290.0 39 19961.0 40 22041.5 41 24122.0 42 27144.0 43 30166.0 44 37297.0 45 44428.0 46 60883.0 47 77338.0 48 68018.5 49 58699.0 50 57061.5 51 55424.0 52 44447.5 53 33471.0 54 27802.0 55 22133.0 56 18165.5 57 14198.0 58 12580.5 59 10963.0 60 9943.0 61 8923.0 62 7646.0 63 6369.0 64 5282.0 65 4195.0 66 3459.5 67 2724.0 68 1995.5 69 1267.0 70 1063.5 71 860.0 72 645.0 73 430.0 74 339.0 75 159.0 76 70.0 77 81.5 78 93.0 79 71.0 80 49.0 81 29.5 82 10.0 83 8.5 84 7.0 85 6.5 86 6.0 87 4.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 499836.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.772496752058224 #Duplication Level Percentage of deduplicated Percentage of total 1 74.90088118503171 27.54292410102878 2 10.918340121504984 8.029892533118183 3 4.137500531914225 4.564386746143651 4 2.1375602653305537 3.14413711656786 5 1.3339044678161787 2.4525498855163197 6 0.8678581672123761 1.9147986981038583 7 0.6138579492514973 1.5801162611553061 8 0.4869568628424078 1.4325295725811922 9 0.3881659305316733 1.2846447377762056 >10 3.9761586756203284 32.71928679773749 >50 0.18885666660401837 4.371344877684309 >100 0.037332131770561536 2.270563701995805 >500 0.006039021315826131 1.53753117759403 >1k 0.00494101744022138 2.933543269645332 >5k 0.0016470058134071266 4.221750523351674 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC 7437 1.4878880272729456 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGC 6989 1.3982586288302563 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCG 6486 1.2976256212037547 No Hit GCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC 2690 0.538176521899183 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2229 0.44594627037668355 No Hit CCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC 1646 0.3293080130282733 TruSeq Adapter, Index 13 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT 1625 0.32510663497627224 No Hit CGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG 1570 0.3141030257924599 No Hit CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT 1296 0.2592850454949224 TruSeq Adapter, Index 16 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT 1254 0.2508822893909202 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTC 1135 0.22707448042958092 No Hit GAATATGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC 1086 0.21727126497491175 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGC 941 0.18826174985395208 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCG 908 0.18165958434366472 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT 864 0.17285669699661488 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 769 0.1538504629518482 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTA 710 0.14204659128194047 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT 667 0.13344376955641452 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC 580 0.1160380604838387 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT 578 0.11563792924079098 No Hit CGTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT 546 0.10923582935202746 No Hit TCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC 545 0.10903576373050361 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC 508 0.1016333357341208 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3073007946606487 0.0 2 0.0 0.0 0.0 1.6533422962731776 0.0 3 0.0 0.0 0.0 2.396185948991269 0.0 4 0.0 0.0 0.0 3.3304924015076947 0.0 5 0.0 0.0 0.0 6.745812626541506 0.0 6 0.0 0.0 0.0 8.300722637024943 0.0 7 0.0 0.0 0.0 9.96326795188822 0.0 8 0.0 0.0 0.0 11.92671196152338 0.0 9 0.0 0.0 0.0 12.561920309861634 0.0 10 0.0 0.0 0.0 15.485479237189798 0.0 11 0.0 0.0 0.0 17.549356188829936 0.0 12 0.0 0.0 0.0 20.748005345753405 0.0 13 0.0 0.0 0.0 21.488248145391687 0.0 14 0.0 0.0 0.0 21.801550908698054 0.0 15 0.0 0.0 0.0 22.42295472915116 0.0 16 0.0 0.0 0.0 23.43568690530494 0.0 17 0.0 0.0 0.0 24.74291567634184 0.0 18 0.0 0.0 0.0 26.07035107515265 0.0 19 0.0 0.0 0.0 26.959042565961635 0.0 20 0.0 0.0 0.0 27.751102361574596 0.0 21 0.0 0.0 0.0 28.648596739730632 0.0 22 0.0 0.0 0.0 29.707143943213374 0.0 23 0.0 0.0 0.0 30.72587808801287 0.0 24 0.0 0.0 0.0 31.477524628078008 0.0 25 0.0 0.0 0.0 32.1515457069919 0.0 26 0.0 0.0 0.0 32.78895477716691 0.0 27 0.0 0.0 0.0 33.45277250938308 0.0 28 2.0006562152385983E-4 0.0 0.0 34.11759056970686 0.0 29 2.0006562152385983E-4 0.0 0.0 34.76420265847198 0.0 30 2.0006562152385983E-4 0.0 0.0 35.506846245568546 0.0 31 2.0006562152385983E-4 0.0 0.0 36.16126089357309 0.0 32 2.0006562152385983E-4 0.0 0.0 36.802671276178586 0.0 33 2.0006562152385983E-4 0.0 0.0 37.4358789683016 0.0 34 2.0006562152385983E-4 0.0 0.0 38.02467209244632 0.0 35 2.0006562152385983E-4 0.0 0.0 38.656679390840196 0.0 36 2.0006562152385983E-4 0.0 0.0 39.20866044062453 0.0 37 2.0006562152385983E-4 0.0 0.0 39.79325218671724 0.0 38 2.0006562152385983E-4 0.0 0.0 40.39284885442425 0.0 39 2.0006562152385983E-4 0.0 0.0 41.00264886882898 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGCG 30 2.1630294E-6 45.000004 20 GTCCGTT 30 2.1630294E-6 45.000004 28 CGGGACG 30 2.1630294E-6 45.000004 6 ATTGCGG 30 2.1630294E-6 45.000004 2 AACGTTG 20 7.0294575E-4 45.0 23 TTTAGCG 50 2.1827873E-11 45.0 1 TTAGGCG 20 7.0294575E-4 45.0 1 AATTTCG 20 7.0294575E-4 45.0 15 GATCGAT 25 3.887632E-5 45.0 9 CCGATTC 20 7.0294575E-4 45.0 24 ACGTTGC 20 7.0294575E-4 45.0 24 CCGATCA 20 7.0294575E-4 45.0 12 ATGTCGC 25 3.887632E-5 45.0 11 ACGGGCG 40 6.8012014E-9 45.0 5 ATGTACG 40 6.8012014E-9 45.0 1 GTCGTCA 25 3.887632E-5 45.0 31 AACGATC 20 7.0294575E-4 45.0 21 CATACGG 25 3.887632E-5 45.0 2 CTCGCGG 25 3.887632E-5 45.0 2 AGTTCGC 20 7.0294575E-4 45.0 32 >>END_MODULE