SRR2936776.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936776.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	941153
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10034	1.0661390868434781	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1665	0.17691066170962638	No Hit
GAATCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTC	1511	0.16054775365960688	No Hit
GCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC	1397	0.14843495159660544	No Hit
CGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTG	1224	0.13005324320275236	No Hit
CTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGCT	1086	0.11539037754754009	No Hit
CCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC	978	0.10391509138259136	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTT	973	0.1033838281342141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTACG	35	1.2116107E-7	45.000004	1
CGACGTC	20	7.032636E-4	45.0	18
CCGCGTC	20	7.032636E-4	45.0	39
ACGTACG	20	7.032636E-4	45.0	1
CGTTTTT	4220	0.0	43.88033	1
CGTTATT	875	0.0	43.45714	1
AATTGCG	75	0.0	42.0	1
CGTAAGG	260	0.0	40.673077	2
AGTACGG	220	0.0	39.886364	2
CTTACGG	85	0.0	39.705883	2
TGCGAAG	80	0.0	39.375	1
TAATGCG	40	3.457335E-7	39.375	1
CACAACG	180	0.0	38.75	12
CTATGCG	35	6.247081E-6	38.57143	1
ATTCACG	35	6.247081E-6	38.57143	12
GTATACG	35	6.247081E-6	38.57143	1
TTCGCAG	70	0.0	38.57143	1
GCGTACG	35	6.247081E-6	38.57143	1
TAGTACG	65	9.094947E-12	38.07692	1
TACGGGA	560	0.0	37.76786	4