SRR2936768.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936768.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	304911
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC	1426	0.4676774534208342	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	1187	0.3892939251125738	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	1133	0.3715838392186573	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	1024	0.335835702877233	TruSeq Adapter, Index 15 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCT	772	0.253188635372289	No Hit
CCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	743	0.24367766331814858	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGCT	731	0.239742088675056	Illumina Single End Adapter 1 (95% over 21bp)
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	666	0.21842439269163788	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	528	0.17316528429607328	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	381	0.12495449491818923	No Hit
TCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	327	0.10724440902427265	TruSeq Adapter, Index 15 (95% over 22bp)
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	308	0.10101308250604274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGA	25	3.8840415E-5	45.000004	14
CCTTATC	25	3.8840415E-5	45.000004	43
AGTCCAT	25	3.8840415E-5	45.000004	8
GACGGGA	115	0.0	45.000004	4
TTAGTCG	25	3.8840415E-5	45.000004	1
CGTTTAC	25	3.8840415E-5	45.000004	33
TCTATGT	25	3.8840415E-5	45.000004	32
AAGTAAG	20	7.025125E-4	45.0	1
CGAGTCG	20	7.025125E-4	45.0	35
GGCGTCA	20	7.025125E-4	45.0	36
GCTATCG	20	7.025125E-4	45.0	1
TAAGTAC	40	6.7866495E-9	45.0	9
TGTTGCG	40	6.7866495E-9	45.0	1
CTACGAA	35	1.208009E-7	45.0	11
TATTCGA	20	7.025125E-4	45.0	32
ACGTGAG	20	7.025125E-4	45.0	1
CTGCACG	20	7.025125E-4	45.0	1
CATACGT	20	7.025125E-4	45.0	10
CTCGCGG	20	7.025125E-4	45.0	2
GCGATAT	20	7.025125E-4	45.0	9