SRR2936767.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936767.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	174831
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGC	1213	0.6938128821547666	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC	1192	0.6818012823812711	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG	1061	0.6068717790323227	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	877	0.5016272857788379	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	485	0.2774107566735876	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT	371	0.21220492933175464	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTT	334	0.1910416344927387	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	320	0.18303390131040834	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCT	257	0.1469991019899217	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	215	0.12297590244293059	TruSeq Adapter, Index 16 (95% over 21bp)
GAATATGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC	212	0.12125995961814554	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTC	183	0.10467251231188977	No Hit
GCGATAAGTCGTTTTAAACTGTCATGTCAGAGGTGTAAACAAACATTTTGG	179	0.10238458854550966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.154915E-6	45.000004	4
TCGTTGA	20	7.0168637E-4	45.000004	1
AGATCCC	20	7.0168637E-4	45.000004	14
CTCGTCC	20	7.0168637E-4	45.000004	37
GGTGTCG	20	7.0168637E-4	45.000004	2
CTCCGGT	20	7.0168637E-4	45.000004	20
TTCAGCG	20	7.0168637E-4	45.000004	25
AAATAAC	20	7.0168637E-4	45.000004	28
ACGCATT	20	7.0168637E-4	45.000004	11
CATTGTA	20	7.0168637E-4	45.000004	36
ATGTGCG	20	7.0168637E-4	45.000004	1
CGTTGAG	20	7.0168637E-4	45.000004	2
CGGCACC	20	7.0168637E-4	45.000004	27
GGGTAAC	20	7.0168637E-4	45.000004	7
GCTGCGG	20	7.0168637E-4	45.000004	2
AATGGTC	30	2.154915E-6	45.000004	10
TGTATAA	20	7.0168637E-4	45.000004	43
TAAGTCG	30	2.154915E-6	45.000004	5
AAGCGGC	30	2.154915E-6	45.000004	22
TCTAGTG	30	2.154915E-6	45.000004	14