SRR2936765.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936765.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331725
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	1865	0.5622126761624839	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	1800	0.5426181324892607	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	1704	0.5136784987565002	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1200	0.3617454216595071	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	979	0.2951239731705479	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	631	0.19021780088929083	Illumina Single End Adapter 1 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTT	559	0.1685130755897204	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	391	0.11786871655738941	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT	351	0.10581053583540584	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAAGT	20	7.026024E-4	45.0	16
GCCCCGT	20	7.026024E-4	45.0	10
CGGGTAT	70	0.0	45.0	6
AACCGGC	20	7.026024E-4	45.0	16
CTCACGT	20	7.026024E-4	45.0	45
GTCGACG	20	7.026024E-4	45.0	1
ACGTTAG	25	3.8847866E-5	45.0	1
ACTTCGC	20	7.026024E-4	45.0	14
GGTCATA	25	3.8847866E-5	45.0	8
GGATATC	20	7.026024E-4	45.0	8
TACGGGT	70	0.0	45.0	4
CGCGACT	25	3.8847866E-5	45.0	13
CGTTATT	25	3.8847866E-5	45.0	1
GTAATAC	20	7.026024E-4	45.0	28
TGATTCG	20	7.026024E-4	45.0	34
CTTTGCG	20	7.026024E-4	45.0	1
TCGTACC	20	7.026024E-4	45.0	38
CTATTAC	25	3.8847866E-5	45.0	16
CCGCGAC	25	3.8847866E-5	45.0	12
CGCGTCG	20	7.026024E-4	45.0	14