SRR2936763.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936763.fastq
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	513174
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGC	4006	0.7806319104241446	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTC	3540	0.6898245039694139	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCG	3349	0.6526051592637195	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC	1702	0.3316613858067634	RNA PCR Primer, Index 40 (96% over 27bp)
GAATGCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTT	1143	0.22273147119690398	No Hit
CTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGCT	724	0.14108275165928125	Illumina PCR Primer Index 8 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC	698	0.13601624400300874	Illumina PCR Primer Index 8 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCT	685	0.13348299017487245	No Hit
GAATATGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTC	652	0.1270524227649881	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGC	638	0.12432430325776442	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTC	593	0.1155553476988312	RNA PCR Primer, Index 40 (95% over 21bp)
GAATAATACCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCG	573	0.1116580341170831	No Hit
GAACTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCT	540	0.10522746670719872	RNA PCR Primer, Index 40 (96% over 25bp)
GCTTGTGGGATTGTGATGATCTAGTGGGCATGTCTGTCACCTGGACAATTG	540	0.10522746670719872	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGC	20	7.0296315E-4	45.000004	20
ACTGCGC	20	7.0296315E-4	45.000004	25
GATCGGT	20	7.0296315E-4	45.000004	10
TAGCGTT	20	7.0296315E-4	45.000004	1
GACGTAG	20	7.0296315E-4	45.000004	1
GGCCGAA	20	7.0296315E-4	45.000004	7
GTCTCGC	20	7.0296315E-4	45.000004	31
ACCGAAT	40	6.8030204E-9	45.000004	28
TATTGCG	30	2.163144E-6	45.000004	1
ACGTATG	20	7.0296315E-4	45.000004	1
TAGTGCG	30	2.163144E-6	45.000004	1
GCGTCAG	20	7.0296315E-4	45.000004	1
ATCGCGG	20	7.0296315E-4	45.000004	2
GCGTAAG	60	0.0	45.000004	1
CGGGTAC	25	3.8877777E-5	45.0	6
TAGCGAG	45	3.8380676E-10	45.0	1
CGTCTTA	25	3.8877777E-5	45.0	26
ATTCGTC	50	2.1827873E-11	45.0	37
TTCGTCA	45	3.8380676E-10	45.0	38
TACGGAC	25	3.8877777E-5	45.0	24