SRR2936759.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936759.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	286976
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	3950	1.376421721677074	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	3277	1.1419073371989295	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	3237	1.1279688893844781	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1598	0.5568409901873328	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	975	0.3397496654772525	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCT	813	0.28329895182872433	No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGCT	721	0.2512405218554862	Illumina Single End Adapter 1 (95% over 21bp)
GGGTAAGGGGTATTAATAAATATTAGCCCACCAACAGCTACCATTACATTT	572	0.19931980374665478	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTC	572	0.19931980374665478	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	527	0.18363904995539695	No Hit
GAATATGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	516	0.17980597680642285	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	510	0.17771520963425513	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCT	440	0.1533229259589652	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTA	422	0.14705062444246209	No Hit
TCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	364	0.12683987511150757	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	344	0.11987065120428189	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTT	305	0.10628066458519178	No Hit
GCTGACTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	287	0.10000836306868867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	30	2.1597898E-6	45.000004	1
GCAACGG	45	3.8198777E-10	45.000004	2
CGCATGG	30	2.1597898E-6	45.000004	2
GTCTCGC	30	2.1597898E-6	45.000004	31
TCGATCC	30	2.1597898E-6	45.000004	28
GTTCGCG	30	2.1597898E-6	45.000004	1
CTCGCGC	30	2.1597898E-6	45.000004	33
TACAAAC	30	2.1597898E-6	45.000004	30
TAATACG	55	1.8189894E-12	45.0	4
TCCGCGG	20	7.0244307E-4	45.0	14
GGTCGTT	40	6.7848305E-9	45.0	8
CTCCGCG	20	7.0244307E-4	45.0	13
GGTCGCT	20	7.0244307E-4	45.0	10
TCCGAAA	20	7.0244307E-4	45.0	25
ATAATTC	20	7.0244307E-4	45.0	40
GACGTTT	20	7.0244307E-4	45.0	28
TAGAACG	20	7.0244307E-4	45.0	1
GCTATAC	20	7.0244307E-4	45.0	30
ACTCTAA	35	1.2076634E-7	45.0	27
GATCCGC	20	7.0244307E-4	45.0	17