SRR2936757.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936757.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	594038
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGC	1696	0.285503620980476	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTC	1594	0.2683330022658483	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	1558	0.2622727838959797	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCG	1475	0.24830061376544935	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	950	0.15992242920486568	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGCT	835	0.14056339830111877	TruSeq Adapter, Index 22 (95% over 23bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	648	0.10908393065763469	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	634	0.10672717906935246	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGATG	70	0.0	45.000004	1
CGTAAGG	140	0.0	45.000004	2
ACGTAAG	35	1.2106102E-7	45.000004	1
CGAACTT	20	7.030531E-4	45.0	18
ACCGGGT	20	7.030531E-4	45.0	4
GACCCGT	20	7.030531E-4	45.0	18
TAGTTCG	20	7.030531E-4	45.0	1
ATATCGC	20	7.030531E-4	45.0	27
ACGGCAC	25	3.8885213E-5	45.0	38
GTTCGCA	20	7.030531E-4	45.0	43
TACGAGA	20	7.030531E-4	45.0	35
ATCCCGA	25	3.8885213E-5	45.0	10
AGTTCGC	20	7.030531E-4	45.0	42
TCCGTCA	20	7.030531E-4	45.0	28
ACATGCG	20	7.030531E-4	45.0	1
CGTGTAA	20	7.030531E-4	45.0	19
CCGGTTA	20	7.030531E-4	45.0	14
GGACCGT	25	3.8885213E-5	45.0	8
TACGTAG	50	2.1827873E-11	45.0	1
ACGAACT	20	7.030531E-4	45.0	17