SRR2936756.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936756.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	761961
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC	6035	0.7920352878953122	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC	5835	0.7657872253304303	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG	5308	0.6966235804719665	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	2198	0.2884662075880524	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT	1182	0.1551260497584522	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1101	0.14449558441967503	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	1059	0.1389834912810498	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	918	0.12047860717280805	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTC	903	0.11851000248044191	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	898	0.11785380091631986	Illumina Single End Adapter 1 (95% over 21bp)
GAATAATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG	853	0.11194798683922143	No Hit
GAATATGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC	836	0.10971690152120647	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC	808	0.106042172762123	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACATA	25	3.889564E-5	45.0	20
CGTTATA	20	7.0317875E-4	45.0	36
TGGCACG	20	7.0317875E-4	45.0	1
CGCTAAT	20	7.0317875E-4	45.0	41
TCGCTCG	25	3.889564E-5	45.0	41
CGGTGTA	20	7.0317875E-4	45.0	21
GCGTGTA	20	7.0317875E-4	45.0	35
CGGTCTA	55	1.8189894E-12	45.0	31
CGTTTAA	20	7.0317875E-4	45.0	24
CAAAGCG	25	3.889564E-5	45.0	45
TATCCGG	20	7.0317875E-4	45.0	2
TAATACG	145	0.0	41.89655	4
ACGGGTA	100	0.0	40.5	5
TGTACGG	125	0.0	39.600002	2
ACAACGA	215	0.0	38.720932	13
AACGTAC	35	6.2455183E-6	38.571426	24
CGAGTAT	35	6.2455183E-6	38.571426	12
TTAACGG	70	0.0	38.571426	2
TATAGCG	35	6.2455183E-6	38.571426	1
TACGGCT	900	0.0	38.5	7