SRR2936755.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936755.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	453643
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGC	7258	1.5999365139548059	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCG	6046	1.3327660737628488	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTC	5673	1.2505428277301756	No Hit
GCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	1958	0.4316169322573037	TruSeq Adapter, Index 21 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCT	1311	0.2889937682274388	No Hit
GAACTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCT	1286	0.28348282680433734	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGC	1108	0.24424492387185517	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTC	986	0.21735152972712024	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCG	978	0.21558802847172778	No Hit
GAATATGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTC	894	0.197071265290107	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTT	807	0.17789318913771401	No Hit
CCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	653	0.14394578997140925	TruSeq Adapter, Index 21 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTACGGACTCGTA	644	0.14196185105909273	No Hit
CTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGCT	541	0.11925677239591485	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	520	0.11462758160050966	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	454	0.10007869624352188	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.028767E-4	45.0	1
CGGGTCA	20	7.028767E-4	45.0	6
TACCCTT	25	3.8870596E-5	45.0	34
ATGATCG	20	7.028767E-4	45.0	27
GATCGAG	20	7.028767E-4	45.0	1
TTTACGA	20	7.028767E-4	45.0	38
GAATGCG	25	3.8870596E-5	45.0	1
GACAAGC	25	3.8870596E-5	45.0	20
GTTAGCG	25	3.8870596E-5	45.0	1
CGTTCCA	25	3.8870596E-5	45.0	23
TGTTGCG	20	7.028767E-4	45.0	26
ACGATAA	20	7.028767E-4	45.0	35
TGCGCGA	25	3.8870596E-5	45.0	27
ATTTTCG	25	3.8870596E-5	45.0	23
GTATGCG	20	7.028767E-4	45.0	1
TTGACGA	20	7.028767E-4	45.0	15
TGCTCGA	20	7.028767E-4	45.0	1
CTCGACT	20	7.028767E-4	45.0	20
TTACGAG	20	7.028767E-4	45.0	1
CACCGTT	20	7.028767E-4	45.0	36