SRR2936750.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936750.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556539
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	1503	0.2700619363602551	Illumina PCR Primer Index 11 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTC	1359	0.24418773886466177	Illumina PCR Primer Index 11 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGC	1251	0.22478209074296682	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCG	1166	0.2095091269434846	No Hit
CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	1031	0.1852520667913659	Illumina PCR Primer Index 11 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGCT	939	0.16872132950251467	Illumina PCR Primer Index 11 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGACG	50	2.1827873E-11	45.000004	1
GTTAGCG	25	3.8882026E-5	45.000004	1
TACGGAC	25	3.8882026E-5	45.000004	4
GCCGATT	25	3.8882026E-5	45.000004	9
TCTACGG	25	3.8882026E-5	45.000004	2
CTCGCGA	25	3.8882026E-5	45.000004	17
GCGATCA	50	2.1827873E-11	45.000004	9
CGCAATC	25	3.8882026E-5	45.000004	20
TATCGAG	25	3.8882026E-5	45.000004	1
CGCATAG	20	7.0301467E-4	45.0	2
ACCGAGT	20	7.0301467E-4	45.0	22
CGACATA	20	7.0301467E-4	45.0	15
ACTTATC	20	7.0301467E-4	45.0	41
TAACGCC	40	6.8048394E-9	45.0	12
TAGCCGT	45	3.8380676E-10	45.0	44
ATCCGTG	20	7.0301467E-4	45.0	12
TAGTTCG	20	7.0301467E-4	45.0	1
ATCCGGT	20	7.0301467E-4	45.0	43
CCGAGTA	20	7.0301467E-4	45.0	23
TGCCTCG	20	7.0301467E-4	45.0	25