SRR2936749.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936749.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	747274
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTC	1752	0.23445215543428516	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGC	1650	0.2208025436453028	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1649	0.22066872392188142	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	1450	0.19403859896102366	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG	1351	0.1807904463423055	No Hit
CTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGCT	867	0.11602170020635	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	781	0.10451320399210999	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTACG	35	1.2111559E-7	45.000004	1
CGTGCTT	20	7.0317E-4	45.0	19
AACGATC	25	3.889492E-5	45.0	42
TTACGCG	25	3.889492E-5	45.0	1
ACTCACG	25	3.889492E-5	45.0	1
TAACGCG	30	2.1644792E-6	44.999996	1
CGTTTTT	730	0.0	42.22603	1
TCTACGG	60	3.6379788E-12	41.249996	2
CTACGAA	60	3.6379788E-12	41.249996	11
TACTACG	55	6.002665E-11	40.909092	1
TATAGCG	45	1.9266736E-8	40.0	1
TGCTACG	80	0.0	39.375	1
TCGACTG	40	3.4560617E-7	39.375	1
AAGTGCG	40	3.4560617E-7	39.375	1
TACGGGT	75	0.0	39.0	4
CGACAGG	75	0.0	39.0	2
GCGATCA	75	0.0	39.0	9
TAACGCC	35	6.2453546E-6	38.57143	12
GGAACGC	70	0.0	38.57143	8
CCACGTC	35	6.2453546E-6	38.57143	33