SRR2936748.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936748.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	357047
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	1265	0.3542950928029083	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	793	0.2220996115357362	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGCT	736	0.2061353267216921	Illumina Single End Adapter 2 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGC	728	0.2038947253442824	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC	656	0.18372931294759512	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCG	576	0.16132329917349816	No Hit
TCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	473	0.13247555643934833	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCT	40	6.7921064E-9	45.0	20
CGGGTAT	20	7.026747E-4	45.0	6
CGGGTAC	35	1.2087912E-7	45.0	6
GGGCTTA	40	6.7921064E-9	45.0	7
GTACAAG	40	6.7921064E-9	45.0	1
ACGTTGA	20	7.026747E-4	45.0	32
TAGACGG	20	7.026747E-4	45.0	2
GCGCGAC	35	1.2087912E-7	45.0	9
GTTTACG	25	3.8853846E-5	45.0	1
TAGCGTG	25	3.8853846E-5	45.0	1
CGTTGCA	20	7.026747E-4	45.0	16
CGACCTC	35	1.2087912E-7	45.0	12
TAAACGG	20	7.026747E-4	45.0	2
ACCGAAT	25	3.8853846E-5	45.0	34
TCGGGCA	35	1.2087912E-7	45.0	5
CCAGCGG	25	3.8853846E-5	45.0	2
TCCTCCG	20	7.026747E-4	45.0	34
CGCGACC	35	1.2087912E-7	45.0	10
CGTTATT	35	1.2087912E-7	45.0	1
GTTACCG	20	7.026747E-4	45.0	21