SRR2936747.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936747.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	326237
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4880	1.4958450451665506	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	2589	0.7935948405606966	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	2556	0.7834794949683819	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	2353	0.7212547932944455	No Hit
GCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	1246	0.3819309275158857	No Hit
CCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	594	0.18207622066166623	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCT	590	0.18085011816562807	No Hit
TCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	496	0.15203670950873138	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	457	0.14008221017235936	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTC	443	0.13579085143622582	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCT	440	0.1348712745641972	No Hit
CTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGCT	425	0.13027339020405412	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTA	408	0.12506245459589194	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	328	0.10054040467512883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGCTA	25	3.8846425E-5	45.000004	40
ACTTGCG	30	2.1607048E-6	45.000004	1
GTCTACG	25	3.8846425E-5	45.000004	1
TCGATCA	25	3.8846425E-5	45.000004	17
ACGGCTC	25	3.8846425E-5	45.000004	29
AGTTCGG	25	3.8846425E-5	45.000004	2
CTCGATC	25	3.8846425E-5	45.000004	16
TGATCGG	35	1.2083547E-7	45.0	2
ACCGCGT	20	7.025851E-4	45.0	44
TAGCGTG	20	7.025851E-4	45.0	1
CCTACCT	20	7.025851E-4	45.0	19
GCGTTTG	20	7.025851E-4	45.0	1
TACGCGG	20	7.025851E-4	45.0	2
TGACCGG	40	6.7884685E-9	45.0	2
AGTTGCG	20	7.025851E-4	45.0	1
CTACGAA	45	3.8380676E-10	45.0	11
TACGAAT	45	3.8380676E-10	45.0	12
ACGGAGC	35	1.2083547E-7	45.0	21
AGCGCCC	20	7.025851E-4	45.0	32
TCGTCAT	20	7.025851E-4	45.0	2