FastQCFastQC Report
Sat 14 Jan 2017
SRR2936746.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936746.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462004
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24980.5406879594116067No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC11550.24999783551657562No Hit
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC5640.1220768651353668No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT4880.10562679111003367Illumina Single End Adapter 2 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACCTA207.0289004E-445.00000417
ATTCGAT207.0289004E-445.00000416
ACGGGTC207.0289004E-445.0000045
TTTGCGC453.8380676E-1045.00000413
CGTCCCA207.0289004E-445.00000423
CCTGCGA207.0289004E-445.00000442
CCGTTAC351.2098099E-745.00000445
CTACTAT253.8871724E-545.023
CATAGCG253.8871724E-545.021
TGTTACG253.8871724E-545.01
TATAGCG253.8871724E-545.01
CGGCTAC253.8871724E-545.025
ATACCGG253.8871724E-545.02
AAGTCGT253.8871724E-545.018
CGTTTTT13350.042.3033751
TAGCATA1050.040.71428730
TCGATCA501.0786607E-940.517
CCCACGA501.0786607E-940.539
CCCCACG501.0786607E-940.538
CTCGATC501.0786607E-940.516