Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936746.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 462004 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2498 | 0.5406879594116067 | No Hit |
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC | 1155 | 0.24999783551657562 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC | 564 | 0.1220768651353668 | No Hit |
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT | 488 | 0.10562679111003367 | Illumina Single End Adapter 2 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACCTA | 20 | 7.0289004E-4 | 45.000004 | 17 |
ATTCGAT | 20 | 7.0289004E-4 | 45.000004 | 16 |
ACGGGTC | 20 | 7.0289004E-4 | 45.000004 | 5 |
TTTGCGC | 45 | 3.8380676E-10 | 45.000004 | 13 |
CGTCCCA | 20 | 7.0289004E-4 | 45.000004 | 23 |
CCTGCGA | 20 | 7.0289004E-4 | 45.000004 | 42 |
CCGTTAC | 35 | 1.2098099E-7 | 45.000004 | 45 |
CTACTAT | 25 | 3.8871724E-5 | 45.0 | 23 |
CATAGCG | 25 | 3.8871724E-5 | 45.0 | 21 |
TGTTACG | 25 | 3.8871724E-5 | 45.0 | 1 |
TATAGCG | 25 | 3.8871724E-5 | 45.0 | 1 |
CGGCTAC | 25 | 3.8871724E-5 | 45.0 | 25 |
ATACCGG | 25 | 3.8871724E-5 | 45.0 | 2 |
AAGTCGT | 25 | 3.8871724E-5 | 45.0 | 18 |
CGTTTTT | 1335 | 0.0 | 42.303375 | 1 |
TAGCATA | 105 | 0.0 | 40.714287 | 30 |
TCGATCA | 50 | 1.0786607E-9 | 40.5 | 17 |
CCCACGA | 50 | 1.0786607E-9 | 40.5 | 39 |
CCCCACG | 50 | 1.0786607E-9 | 40.5 | 38 |
CTCGATC | 50 | 1.0786607E-9 | 40.5 | 16 |