SRR2936746.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936746.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	462004
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2498	0.5406879594116067	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	1155	0.24999783551657562	No Hit
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	564	0.1220768651353668	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	488	0.10562679111003367	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACCTA	20	7.0289004E-4	45.000004	17
ATTCGAT	20	7.0289004E-4	45.000004	16
ACGGGTC	20	7.0289004E-4	45.000004	5
TTTGCGC	45	3.8380676E-10	45.000004	13
CGTCCCA	20	7.0289004E-4	45.000004	23
CCTGCGA	20	7.0289004E-4	45.000004	42
CCGTTAC	35	1.2098099E-7	45.000004	45
CTACTAT	25	3.8871724E-5	45.0	23
CATAGCG	25	3.8871724E-5	45.0	21
TGTTACG	25	3.8871724E-5	45.0	1
TATAGCG	25	3.8871724E-5	45.0	1
CGGCTAC	25	3.8871724E-5	45.0	25
ATACCGG	25	3.8871724E-5	45.0	2
AAGTCGT	25	3.8871724E-5	45.0	18
CGTTTTT	1335	0.0	42.303375	1
TAGCATA	105	0.0	40.714287	30
TCGATCA	50	1.0786607E-9	40.5	17
CCCACGA	50	1.0786607E-9	40.5	39
CCCCACG	50	1.0786607E-9	40.5	38
CTCGATC	50	1.0786607E-9	40.5	16