SRR2936745.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936745.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	258314
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2837	1.0982757419264926	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCG	1127	0.436290715950355	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGC	1017	0.3937068838700187	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTC	801	0.3100877226940855	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	721	0.2791176629992954	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTT	25	3.8823822E-5	45.000004	1
GGCGAAT	25	3.8823822E-5	45.000004	8
CTTAACG	20	7.023122E-4	45.0	44
GCGAATA	20	7.023122E-4	45.0	9
GGCACCT	20	7.023122E-4	45.0	8
TAGCGTC	20	7.023122E-4	45.0	35
TGGGTCG	20	7.023122E-4	45.0	1
AAGCGTG	20	7.023122E-4	45.0	34
TACGGGT	20	7.023122E-4	45.0	4
CACGAAG	20	7.023122E-4	45.0	1
CGACAAT	35	1.207045E-7	45.0	20
TGCGATA	20	7.023122E-4	45.0	1
CTCATAA	20	7.023122E-4	45.0	11
TTAACGA	20	7.023122E-4	45.0	45
GAGCCGC	20	7.023122E-4	45.0	40
CGTAAGG	20	7.023122E-4	45.0	2
AATAGCG	20	7.023122E-4	45.0	33
CGCGTCG	20	7.023122E-4	45.0	15
CGGAGAC	20	7.023122E-4	45.0	28
TCGCGTC	20	7.023122E-4	45.0	14