SRR2936743.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936743.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443080
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3175	0.7165748848966327	No Hit
GCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	1137	0.256612801299991	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCG	1029	0.23223797056964882	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGC	993	0.22411302699286811	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTC	765	0.17265505100659023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	25	3.8869126E-5	45.0	25
AAACTCG	20	7.0285884E-4	45.0	42
CGGGTAC	35	1.2096643E-7	45.0	6
CCGGGTA	35	1.2096643E-7	45.0	5
CGAACAC	25	3.8869126E-5	45.0	32
TCCGCAA	25	3.8869126E-5	45.0	33
CCTACGA	20	7.0285884E-4	45.0	27
TACGGGT	20	7.0285884E-4	45.0	4
CTGACGT	20	7.0285884E-4	45.0	38
ATCCGTA	25	3.8869126E-5	45.0	34
CTTGCGA	25	3.8869126E-5	45.0	42
ACAATCC	20	7.0285884E-4	45.0	24
ATCCATA	25	3.8869126E-5	45.0	29
CGAATGG	20	7.0285884E-4	45.0	2
TAGGGCG	70	0.0	45.0	5
GCGATCT	20	7.0285884E-4	45.0	9
ACGTCTT	20	7.0285884E-4	45.0	41
TATAGCG	35	1.2096643E-7	45.0	1
CGGTCTA	25	3.8869126E-5	45.0	31
CGCAATC	35	1.2096643E-7	45.0	20