SRR2936740.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936740.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	419767
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3431	0.8173582010972754	No Hit
GCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	820	0.1953464660156706	Illumina Single End Adapter 1 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCG	758	0.18057636736570526	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGC	738	0.17581181941410354	No Hit
CCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	565	0.13459847963274865	Illumina Single End Adapter 1 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTC	514	0.12244888235616426	No Hit
CTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGCT	467	0.11125219466990022	Illumina Single End Adapter 1 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCACG	20	7.028163E-4	45.000004	1
TCCGCGA	20	7.028163E-4	45.000004	33
ATAATCC	20	7.028163E-4	45.000004	39
CGCGAAT	20	7.028163E-4	45.000004	35
ACGATAT	20	7.028163E-4	45.000004	12
CTAACGA	30	2.1621963E-6	45.000004	13
TATTCGG	20	7.028163E-4	45.000004	2
CGTCGAC	20	7.028163E-4	45.000004	17
ACCCGTA	20	7.028163E-4	45.000004	12
ACCCGAT	20	7.028163E-4	45.000004	41
CGGTAGT	30	2.1621963E-6	45.000004	12
TTACCGG	20	7.028163E-4	45.000004	2
TGCACGC	20	7.028163E-4	45.000004	43
CCCGATT	20	7.028163E-4	45.000004	42
TCGCAGC	25	3.8865604E-5	45.0	14
GCACGAT	25	3.8865604E-5	45.0	14
CACGATC	25	3.8865604E-5	45.0	15
TTGCGAT	35	1.2094642E-7	45.0	19
ACCCGTG	25	3.8865604E-5	45.0	35
CGATCCC	25	3.8865604E-5	45.0	43