##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936740.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 419767 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.219426491363066 31.0 31.0 33.0 28.0 34.0 2 31.258224205332958 31.0 31.0 34.0 28.0 34.0 3 31.021257030686073 31.0 31.0 34.0 28.0 34.0 4 34.98539666052834 35.0 35.0 37.0 32.0 37.0 5 35.238915874759094 35.0 35.0 37.0 33.0 37.0 6 35.224152922931054 36.0 35.0 37.0 33.0 37.0 7 30.89419368363878 35.0 35.0 37.0 0.0 37.0 8 33.054851858292814 36.0 35.0 37.0 17.0 37.0 9 36.39542174587331 39.0 35.0 39.0 32.0 39.0 10 36.216636848537405 37.0 35.0 39.0 32.0 39.0 11 36.491646556303856 38.0 35.0 39.0 32.0 39.0 12 36.557211500665844 38.0 35.0 39.0 32.0 39.0 13 36.49070794035739 39.0 35.0 39.0 32.0 39.0 14 37.549881243642304 39.0 36.0 41.0 33.0 41.0 15 37.771999704598024 39.0 37.0 41.0 33.0 41.0 16 37.717281253647855 39.0 36.0 41.0 33.0 41.0 17 37.62322669480926 39.0 36.0 41.0 33.0 41.0 18 37.51536209373295 39.0 36.0 40.0 33.0 41.0 19 37.30739195791951 39.0 36.0 40.0 32.0 41.0 20 37.300814499472324 39.0 35.0 40.0 32.0 41.0 21 37.30037854333475 39.0 35.0 40.0 32.0 41.0 22 37.34866961909822 39.0 35.0 40.0 32.0 41.0 23 37.40630397339476 39.0 35.0 40.0 33.0 41.0 24 37.33488101732628 39.0 35.0 41.0 32.0 41.0 25 37.005405379651094 39.0 35.0 40.0 32.0 41.0 26 36.99598825062475 39.0 35.0 40.0 32.0 41.0 27 37.046904592309545 39.0 35.0 40.0 32.0 41.0 28 37.06812827115996 39.0 35.0 40.0 32.0 41.0 29 37.070946501273326 39.0 35.0 40.0 32.0 41.0 30 36.85392610662582 39.0 35.0 40.0 31.0 41.0 31 36.80691192971339 39.0 35.0 40.0 31.0 41.0 32 36.65239763964294 39.0 35.0 40.0 31.0 41.0 33 36.495174704062016 39.0 35.0 40.0 30.0 41.0 34 36.36358741873468 39.0 35.0 40.0 30.0 41.0 35 36.29542341346509 39.0 35.0 40.0 30.0 41.0 36 36.23880390788223 39.0 35.0 40.0 30.0 41.0 37 36.08576662767678 39.0 35.0 40.0 30.0 41.0 38 36.00607718091227 39.0 35.0 40.0 29.0 41.0 39 35.96520688858343 39.0 35.0 40.0 29.0 41.0 40 35.87408252673507 38.0 35.0 40.0 29.0 41.0 41 35.752653257640546 38.0 35.0 40.0 29.0 41.0 42 35.73362603539583 38.0 35.0 40.0 28.0 41.0 43 35.6679562709789 38.0 35.0 40.0 28.0 41.0 44 35.45543122732373 38.0 35.0 40.0 27.0 41.0 45 35.408860153370796 38.0 34.0 40.0 27.0 41.0 46 35.35700281346556 38.0 34.0 40.0 27.0 41.0 47 35.319951306319936 38.0 34.0 40.0 27.0 41.0 48 35.23657409944088 38.0 34.0 40.0 27.0 41.0 49 35.11507812667504 38.0 34.0 40.0 26.0 41.0 50 34.95158981053775 37.0 34.0 40.0 26.0 41.0 51 33.31579900278011 36.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 23.0 9 44.0 10 43.0 11 44.0 12 13.0 13 15.0 14 17.0 15 28.0 16 48.0 17 99.0 18 160.0 19 333.0 20 541.0 21 944.0 22 1403.0 23 1836.0 24 2736.0 25 3955.0 26 5185.0 27 6137.0 28 6390.0 29 7198.0 30 8672.0 31 11090.0 32 14632.0 33 20616.0 34 32154.0 35 36638.0 36 41986.0 37 63327.0 38 85035.0 39 68421.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.05134515100043 21.6408150235726 23.96329392258086 13.344545902846102 2 35.149023148556225 23.430617461591787 25.137754992650684 16.282604397201304 3 32.35866564070067 22.563231507002694 28.94153184981192 16.13657100248471 4 29.561875993110466 24.831871014157855 26.78390630992908 18.8223466828026 5 25.992991349963194 29.05373695407214 25.73070298522752 19.222568710737146 6 26.14355106523381 35.5764030998149 24.935738159502773 13.344307675448523 7 67.07149442428776 19.28974883685473 10.328110594687052 3.3106461441704567 8 78.9835789854848 6.025485566993118 10.863169329651926 4.127766117870152 9 72.36657479030033 8.65837476504823 12.56625699495196 6.408793449699476 10 40.76904568486803 25.20827030233439 19.987278656969224 14.035405355828354 11 30.921439751100017 26.681706756367223 25.060331088437156 17.336522404095607 12 29.495410549185618 22.95964189657596 29.608330335638584 17.936617218599842 13 24.5693444220246 24.666779427634854 31.427434743560116 19.336441406780427 14 20.068275972146452 28.69210776454557 30.07668539928103 21.16293086402695 15 19.34716163967153 26.286725731179438 35.37915081461859 18.986961814530442 16 21.929308402042086 24.59912284672211 34.61158213961555 18.859986611620254 17 22.13323105437064 24.51741084935214 30.612458816438643 22.73689927983858 18 22.38551386840795 25.745949538672647 31.101539663670557 20.766996929248847 19 24.174125169439236 26.8339340634209 28.95630194846188 20.03563881867798 20 25.733799941396065 26.1747588543168 28.769055213963934 19.322385990323205 21 25.198264751636028 25.538929930175552 29.714817982356877 19.547987335831547 22 22.92843410749297 24.938120433478574 28.760240800253474 23.373204658774988 23 22.511059706932656 26.48898079172493 29.550202850629038 21.449756650713372 24 23.292445570995337 24.23773188459312 31.119168491091486 21.350654053320056 25 21.81233874983026 26.544726002758672 29.384396581913297 22.258538665497767 26 20.94638215962665 28.272827544804617 30.17602622407193 20.604764071496806 27 22.12822827902146 27.991480988262534 30.58434798352419 19.295942749191813 28 20.738886096334394 27.39281553814378 30.982425964880516 20.885872400641308 29 20.580941331738796 26.95185662522304 31.870775930456656 20.596426112581504 30 22.47008459454888 25.95273091977216 31.00767806902401 20.569506416654953 31 22.99728182539361 27.483818404019374 28.064140344524464 21.45475942606255 32 24.0704962514919 28.055564158211578 28.468650465615447 19.405289124681076 33 24.246784525701162 27.342073102459217 27.638189757651265 20.77295261418835 34 21.956704552763796 28.33667248735608 29.08732701713093 20.61929594274919 35 23.042068576138668 25.46388829993782 29.4406182477422 22.05342487618131 36 24.144108517344147 27.074305507579204 28.632789142548127 20.14879683252852 37 23.063509041920874 29.562352447905628 28.651609106956954 18.722529403216544 38 23.549731160381832 28.43005762720747 26.28744041337218 21.732770799038516 39 23.154035453001306 27.821148398992772 28.109641777462258 20.91517437054366 40 24.96480190200754 25.638747209761604 29.508513056052525 19.887937832178327 41 21.00022155147975 26.80915841407257 30.221527657009723 21.96909237743796 42 23.566407078212436 26.303401649010045 28.604916537031254 21.525274735746258 43 24.06906688710642 26.156891799498293 28.490090931397656 21.28395038199763 44 22.729276003116013 27.20866575981437 28.1594313035565 21.902626933513115 45 22.21232255036723 27.20556880364583 27.401391724456666 23.18071692153028 46 23.045641987102368 27.382333532650254 27.901431031977264 21.67059344827011 47 21.935740541776745 27.120998077504904 30.05095684034238 20.89230454037597 48 23.09543151319661 24.50573770687072 30.342070720185244 22.056760059747432 49 21.902626933513115 25.417672184807287 30.328253531125597 22.351447350554 50 21.127673209185097 25.779063146936277 30.165305991180823 22.927957652697806 51 21.25131322852916 25.29689089423418 28.741897290639805 24.70989858659685 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 154.0 1 514.0 2 874.0 3 3439.5 4 6005.0 5 4072.5 6 2140.0 7 1996.0 8 1852.0 9 1800.0 10 1748.0 11 1716.5 12 1685.0 13 1682.0 14 1679.0 15 1510.0 16 1341.0 17 1384.0 18 1427.0 19 1555.0 20 1683.0 21 1952.0 22 2221.0 23 2548.0 24 2875.0 25 3234.0 26 3908.5 27 4224.0 28 5398.0 29 6572.0 30 7806.0 31 9040.0 32 9826.5 33 10613.0 34 11213.0 35 11813.0 36 13017.5 37 14222.0 38 14739.0 39 15256.0 40 17698.0 41 20140.0 42 22484.0 43 24828.0 44 27059.5 45 29291.0 46 32356.0 47 35421.0 48 35326.5 49 35232.0 50 33581.5 51 31931.0 52 28414.5 53 24898.0 54 22429.5 55 19961.0 56 19532.5 57 19104.0 58 19001.5 59 18899.0 60 18306.0 61 17713.0 62 16130.5 63 14548.0 64 12154.5 65 9761.0 66 8116.0 67 6471.0 68 5092.5 69 3714.0 70 3238.0 71 2762.0 72 2308.5 73 1855.0 74 1519.5 75 800.0 76 416.0 77 352.5 78 289.0 79 220.0 80 151.0 81 110.5 82 70.0 83 58.5 84 47.0 85 32.0 86 17.0 87 17.0 88 17.0 89 18.5 90 20.0 91 12.0 92 4.0 93 5.0 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 419767.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.01176669467851 #Duplication Level Percentage of deduplicated Percentage of total 1 73.96127771984519 24.415924445278534 2 9.33595471847202 6.163927180765627 3 3.63461667743996 3.5995535334070663 4 2.137503563757915 2.8225107582328066 5 1.4079898164017413 2.324011566376876 6 0.9899926313618597 1.9608843465581143 7 0.7840110746473642 1.811711347761208 8 0.6433983894394019 1.6991774019124353 9 0.5298118908133158 1.5741023878436102 >10 6.373078320607128 46.57318295060228 >50 0.16189215777130864 3.3103929786101696 >100 0.036136642359667105 2.116027050615754 >500 0.0036136642359667105 0.8100024621536233 >1k 7.227328471933421E-4 0.8185915898819093 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3431 0.8173582010972754 No Hit GCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC 820 0.1953464660156706 Illumina Single End Adapter 1 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCG 758 0.18057636736570526 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGC 738 0.17581181941410354 No Hit CCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC 565 0.13459847963274865 Illumina Single End Adapter 1 (95% over 23bp) GAATCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTC 514 0.12244888235616426 No Hit CTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGCT 467 0.11125219466990022 Illumina Single End Adapter 1 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1305486138738872 0.0 2 0.0 0.0 0.0 0.6303496939969078 0.0 3 0.0 0.0 0.0 0.8321282997472408 0.0 4 0.0 0.0 0.0 1.101087031615158 0.0 5 0.0 0.0 0.0 1.9170158683269527 0.0 6 0.0 0.0 0.0 2.2991326140454107 0.0 7 0.0 0.0 0.0 2.7069779187025182 0.0 8 0.0 0.0 0.0 3.434286163514521 0.0 9 0.0 0.0 0.0 3.6999097118163173 0.0 10 0.0 0.0 0.0 4.5082152718055495 0.0 11 0.0 0.0 0.0 5.488282785450023 0.0 12 0.0 0.0 0.0 6.359718605797978 0.0 13 0.0 0.0 0.0 6.685375458289956 0.0 14 0.0 0.0 0.0 6.832599989994449 0.0 15 0.0 0.0 0.0 7.135148784921158 0.0 16 0.0 0.0 0.0 7.698794807595642 0.0 17 2.382273975800861E-4 0.0 0.0 8.337720687905433 0.0 18 2.382273975800861E-4 0.0 0.0 9.096713176595587 0.0 19 2.382273975800861E-4 0.0 0.0 9.554824462142093 0.0 20 2.382273975800861E-4 0.0 0.0 9.969578361329024 0.0 21 2.382273975800861E-4 0.0 0.0 10.48486422229475 0.0 22 2.382273975800861E-4 0.0 0.0 11.044936834005531 0.0 23 2.382273975800861E-4 0.0 0.0 11.59023934706635 0.0 24 2.382273975800861E-4 0.0 0.0 12.018572207915344 0.0 25 2.382273975800861E-4 0.0 0.0 12.405453501585404 0.0 26 2.382273975800861E-4 0.0 0.0 12.756838913016031 0.0 27 2.382273975800861E-4 0.0 0.0 13.113703554591 0.0 28 2.382273975800861E-4 0.0 0.0 13.464850738624046 0.0 29 2.382273975800861E-4 0.0 0.0 13.851493804896526 0.0 30 2.382273975800861E-4 0.0 0.0 14.301028904130149 0.0 31 2.382273975800861E-4 0.0 0.0 14.704586115630814 0.0 32 2.382273975800861E-4 0.0 0.0 15.144353891563654 0.0 33 2.382273975800861E-4 0.0 0.0 15.530758730438553 0.0 34 2.382273975800861E-4 0.0 0.0 15.903822835048967 0.0 35 2.382273975800861E-4 0.0 0.0 16.332632150693122 0.0 36 2.382273975800861E-4 0.0 0.0 16.764300195108238 0.0 37 2.382273975800861E-4 0.0 0.0 17.196206466920934 0.0 38 2.382273975800861E-4 0.0 0.0 17.583564215386154 0.0 39 2.382273975800861E-4 0.0 0.0 18.008085437873866 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCACG 20 7.028163E-4 45.000004 1 TCCGCGA 20 7.028163E-4 45.000004 33 ATAATCC 20 7.028163E-4 45.000004 39 CGCGAAT 20 7.028163E-4 45.000004 35 ACGATAT 20 7.028163E-4 45.000004 12 CTAACGA 30 2.1621963E-6 45.000004 13 TATTCGG 20 7.028163E-4 45.000004 2 CGTCGAC 20 7.028163E-4 45.000004 17 ACCCGTA 20 7.028163E-4 45.000004 12 ACCCGAT 20 7.028163E-4 45.000004 41 CGGTAGT 30 2.1621963E-6 45.000004 12 TTACCGG 20 7.028163E-4 45.000004 2 TGCACGC 20 7.028163E-4 45.000004 43 CCCGATT 20 7.028163E-4 45.000004 42 TCGCAGC 25 3.8865604E-5 45.0 14 GCACGAT 25 3.8865604E-5 45.0 14 CACGATC 25 3.8865604E-5 45.0 15 TTGCGAT 35 1.2094642E-7 45.0 19 ACCCGTG 25 3.8865604E-5 45.0 35 CGATCCC 25 3.8865604E-5 45.0 43 >>END_MODULE