SRR2936739.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936739.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	442742
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4137	0.9344042354237908	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGC	2195	0.4957740625465847	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCG	2168	0.48967570277949685	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTC	1712	0.3866811822686802	No Hit
GCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC	1459	0.32953729259930165	TruSeq Adapter, Index 21 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC	711	0.16059014053331286	TruSeq Adapter, Index 21 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTT	676	0.15268485935375456	No Hit
CTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGCT	547	0.12354825157766826	Illumina Paired End PCR Primer 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCT	444	0.10028413839211098	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATT	30	2.1624674E-6	45.000004	34
TACGCGG	45	3.8380676E-10	45.000004	2
ACTAACG	30	2.1624674E-6	45.000004	1
CCAACTC	30	2.1624674E-6	45.000004	42
TGCACGG	30	2.1624674E-6	45.000004	2
TCACGAC	20	7.0285815E-4	45.0	25
GTCGATA	20	7.0285815E-4	45.0	25
GATCGGC	20	7.0285815E-4	45.0	12
CGAAAGG	25	3.886907E-5	45.0	2
TAGGTCG	35	1.2096643E-7	45.0	23
CGTGACG	25	3.886907E-5	45.0	19
CGTTGGC	20	7.0285815E-4	45.0	40
GAATCGT	20	7.0285815E-4	45.0	28
GCACGGT	20	7.0285815E-4	45.0	3
CGTCTGG	25	3.886907E-5	45.0	2
TAACGGT	20	7.0285815E-4	45.0	17
ACGGGTC	20	7.0285815E-4	45.0	5
AACGGTC	25	3.886907E-5	45.0	6
CGGATGC	20	7.0285815E-4	45.0	38
TGCGATG	20	7.0285815E-4	45.0	12