SRR2936734.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936734.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	448532
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4310	0.9609124878492504	No Hit
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	1263	0.28158526036046483	TruSeq Adapter, Index 27 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	754	0.1681039479903329	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	752	0.16765804892404554	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTC	641	0.14291065074509735	No Hit
TGTTGTGAGGATTAAAATGAGAAAATGAATGTAAAACACTTAGCATGGTGT	562	0.1252976376267468	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	524	0.11682555536728706	No Hit
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	480	0.10701577590896524	TruSeq Adapter, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTGCG	35	1.2097189E-7	45.000004	1
TAATACG	25	3.8869883E-5	45.0	1
GTACCGG	20	7.028681E-4	45.0	2
CGACCGG	20	7.028681E-4	45.0	2
GCACGCT	20	7.028681E-4	45.0	41
CCGCTTG	20	7.028681E-4	45.0	39
ACGGGTA	55	1.8189894E-12	45.0	5
ATCCGGT	20	7.028681E-4	45.0	11
GTTACCG	20	7.028681E-4	45.0	41
CGTACTT	20	7.028681E-4	45.0	35
GTATCCG	20	7.028681E-4	45.0	9
ATGCGAC	20	7.028681E-4	45.0	12
CGGTCAA	20	7.028681E-4	45.0	45
TATCGAG	20	7.028681E-4	45.0	1
TGTCGCT	20	7.028681E-4	45.0	27
TAGTCCG	25	3.8869883E-5	45.0	19
GCGTAAG	55	1.8189894E-12	45.0	1
CGCTTCA	25	3.8869883E-5	45.0	44
TGCAACG	20	7.028681E-4	45.0	1
TGATCCA	30	2.162531E-6	44.999996	38