SRR2936733.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936733.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	381092
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2041	0.535566214982209	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	662	0.17371133479579734	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	650	0.17056248884783726	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	566	0.14852056721211676	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	542	0.14222287531619662	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	456	0.11965614602248276	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	382	0.10023826267672897	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAC	20	7.0273434E-4	45.000004	35
ACTATGC	20	7.0273434E-4	45.000004	37
CGTATGG	20	7.0273434E-4	45.000004	2
GATCGAC	20	7.0273434E-4	45.000004	9
CGACGTT	20	7.0273434E-4	45.000004	26
TAGCGCG	20	7.0273434E-4	45.000004	1
ACCTATA	20	7.0273434E-4	45.000004	38
CCCGTAC	20	7.0273434E-4	45.000004	37
TGCGCGA	20	7.0273434E-4	45.000004	16
TCCACGG	20	7.0273434E-4	45.000004	2
GTACTAG	20	7.0273434E-4	45.000004	1
ACGTCCA	20	7.0273434E-4	45.000004	11
TTACGTC	20	7.0273434E-4	45.000004	9
GCTAACG	20	7.0273434E-4	45.000004	1
TCGACGT	20	7.0273434E-4	45.000004	25
TCGACAA	20	7.0273434E-4	45.000004	19
TGTCGTC	20	7.0273434E-4	45.000004	34
TCGAAAT	20	7.0273434E-4	45.000004	34
TACGTCC	20	7.0273434E-4	45.000004	10
ATCGAAA	20	7.0273434E-4	45.000004	33