SRR2936732.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936732.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	304662
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4810	1.5787987999816189	No Hit
GCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC	839	0.2753871503502242	No Hit
CCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC	620	0.20350421122424192	No Hit
TTATATGGGAACATATCCTTCCTCCTTTAAACTCATAAACTATTTTTTGAC	543	0.1782303011205861	No Hit
CTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGCT	471	0.15459755401067413	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	372	0.12210252673454516	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCC	20	7.025115E-4	45.000004	30
CGGCCTA	20	7.025115E-4	45.000004	39
TTCCGCA	20	7.025115E-4	45.000004	22
CACGTAT	20	7.025115E-4	45.000004	28
TTCGCGA	20	7.025115E-4	45.000004	1
CAATACG	20	7.025115E-4	45.000004	42
TGGTATT	20	7.025115E-4	45.000004	37
CGGCATT	25	3.8840357E-5	44.999996	20
TAGCGGA	30	2.1602318E-6	44.999996	3
TTATCGC	25	3.8840357E-5	44.999996	31
GTAGCGG	60	0.0	44.999996	2
ACGGCAT	25	3.8840357E-5	44.999996	19
TGTAGCG	25	3.8840357E-5	44.999996	1
TCGCGGC	25	3.8840357E-5	44.999996	34
TACGTAG	25	3.8840357E-5	44.999996	1
CGTTTTT	2125	0.0	43.2	1
GTCGGGA	60	3.6379788E-12	41.249996	4
TAGACGG	50	1.0768417E-9	40.499996	2
ACATACG	45	1.9203071E-8	40.000004	17
CTATCTC	80	0.0	39.375004	5