SRR2936729.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936729.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	386362
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3435	0.889062588970965	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGC	1446	0.3742604086323189	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCG	1386	0.35873093109570814	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTC	1082	0.28004824491021374	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGC	988	0.2557187301028569	No Hit
CTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGCT	479	0.12397699566727577	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	448	0.11595343227336022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.0274656E-4	45.000004	25
TAGACCG	35	1.2091368E-7	45.000004	1
AGAACCG	20	7.0274656E-4	45.000004	10
AAGTTAG	30	2.161747E-6	45.000004	1
ACGTGCG	20	7.0274656E-4	45.000004	1
CGAATAT	60	0.0	45.000004	14
AACGACG	20	7.0274656E-4	45.000004	1
GCTACGA	60	0.0	45.000004	10
GCGCTAG	20	7.0274656E-4	45.000004	9
CCCGGTC	20	7.0274656E-4	45.000004	36
CGATCAC	20	7.0274656E-4	45.000004	13
TCGCGAG	20	7.0274656E-4	45.000004	15
TAGTAAC	20	7.0274656E-4	45.000004	10
TGATCGG	45	3.8380676E-10	45.0	2
GCGAATT	25	3.885982E-5	45.0	9
ACCGCAC	25	3.885982E-5	45.0	10
GGCGCTA	25	3.885982E-5	45.0	8
GGTTCGC	25	3.885982E-5	45.0	41
CGTTTTT	1570	0.0	43.71019	1
TACGAAT	65	0.0	41.53846	12