SRR2936728.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936728.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	265559
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3847	1.4486422979450895	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGC	2433	0.9161805851053815	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCG	2205	0.8303239581411288	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTC	1683	0.633757470091392	No Hit
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	1003	0.37769384581204174	No Hit
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	567	0.21351187495057597	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCT	480	0.1807507936089532	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	458	0.1724663822352095	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTA	349	0.13142088951984304	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTC	347	0.13066776121313908	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCT	307	0.11560519507905964	No Hit
GGGGCAGGGGACTTGATTTACCTAGCAGGTACCTACATGGGGAATGTACAT	295	0.1110864252388358	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	278	0.10468483463185205	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACTA	25	3.8826787E-5	45.0	8
CTCACGT	20	7.023482E-4	45.0	10
CAACGAA	20	7.023482E-4	45.0	14
CGGTTTA	25	3.8826787E-5	45.0	1
CGCATGG	25	3.8826787E-5	45.0	2
ATTAACG	35	1.2072087E-7	45.0	1
ACGGGTG	20	7.023482E-4	45.0	5
GCACCGG	40	6.7811925E-9	45.0	2
CGGGCCG	20	7.023482E-4	45.0	6
CGGGCAC	35	1.2072087E-7	45.0	6
GGCGGTT	25	3.8826787E-5	45.0	8
GGGCCGA	20	7.023482E-4	45.0	7
ACAGACG	20	7.023482E-4	45.0	2
CGCACGG	20	7.023482E-4	45.0	3
CACGTTG	25	3.8826787E-5	45.0	13
CACGTAA	20	7.023482E-4	45.0	12
TATCGGG	20	7.023482E-4	45.0	3
CGAAGCC	20	7.023482E-4	45.0	17
GCTCACG	20	7.023482E-4	45.0	9
CACGGAT	30	2.1591768E-6	44.999996	20