SRR2936724.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936724.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167598
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2882	1.719590925906037	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	1332	0.7947588873375577	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	1284	0.7661189274335016	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	996	0.5942791680091648	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	918	0.5477392331650736	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	469	0.2798362748958818	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	303	0.18078974689435434	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	273	0.16288977195431925	No Hit
TCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	254	0.15155312115896372	No Hit
TATCGCGGGGAATGTTGTACTTACACCTCTGTACAGAAATGACAGTGAGCT	244	0.14558646284561869	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	220	0.1312664828935906	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	206	0.12291316125490757	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTA	192	0.11455983961622454	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	181	0.10799651547154501	No Hit
ACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	172	0.1026265229895345	No Hit
TATTAGATGTTTGTGTAATCACTTGCTTATTTAAATAAATTTTGAGTACTG	168	0.10023985966419646	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTGG	30	2.1543747E-6	45.000004	2
AATGGAG	30	2.1543747E-6	45.000004	17
GACCCCA	30	2.1543747E-6	45.000004	29
ACGGGAG	30	2.1543747E-6	45.000004	5
CCGAGGG	30	2.1543747E-6	45.000004	3
GGGCCGA	30	2.1543747E-6	45.000004	7
GGACCAT	30	2.1543747E-6	45.000004	8
TCTGCGG	20	7.016028E-4	45.0	4
ACAACGG	20	7.016028E-4	45.0	2
TTCTAGA	25	3.8765058E-5	45.0	44
TGTCAGT	20	7.016028E-4	45.0	31
TTAGGCG	20	7.016028E-4	45.0	1
TAGAGCC	20	7.016028E-4	45.0	41
AACCGAG	20	7.016028E-4	45.0	11
CAAACTC	25	3.8765058E-5	45.0	19
ATTAGGA	25	3.8765058E-5	45.0	4
ATCTACC	20	7.016028E-4	45.0	15
GGATGCA	25	3.8765058E-5	45.0	9
CATGCAT	20	7.016028E-4	45.0	25
GCGCGAT	20	7.016028E-4	45.0	1