SRR2936723.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936723.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	465353
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2880	0.6188850184698498	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCG	1609	0.3457590259437459	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGC	1581	0.33974208826417795	No Hit
GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC	1421	0.3053595872380752	Illumina PCR Primer Index 8 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTC	1374	0.2952597275616575	RNA PCR Primer, Index 29 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC	694	0.14913409820072074	RNA PCR Primer, Index 29 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGCT	514	0.11045378454635513	RNA PCR Primer, Index 29 (96% over 26bp)
GGTATGAATGGTCACATTGCTTGGGGAAAGTAAGTTGAGAACATTCTCAAG	502	0.10787509696939743	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	478	0.10271772181548201	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	30	2.1627056E-6	45.000004	1
ACGCGAA	25	3.887216E-5	45.0	22
GATCGTC	20	7.028956E-4	45.0	41
CGCGGTC	20	7.028956E-4	45.0	31
GACCGGA	20	7.028956E-4	45.0	9
CGACCGT	20	7.028956E-4	45.0	21
CCTCGAG	20	7.028956E-4	45.0	28
CCGTCAA	20	7.028956E-4	45.0	18
CGTTACG	25	3.887216E-5	45.0	25
GTTACGA	25	3.887216E-5	45.0	26
ACGATCA	25	3.887216E-5	45.0	29
TACGATC	25	3.887216E-5	45.0	28
TACGACG	25	3.887216E-5	45.0	1
CCTCATA	20	7.028956E-4	45.0	44
TCGTCTC	20	7.028956E-4	45.0	42
GTCCGAA	20	7.028956E-4	45.0	38
ACTAAAC	20	7.028956E-4	45.0	27
AGTTACG	35	1.2098462E-7	45.0	1
TTACGGA	20	7.028956E-4	45.0	40
TTACGAT	25	3.887216E-5	45.0	27