##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936723.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 465353 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.0812028717984 31.0 31.0 33.0 28.0 34.0 2 31.119438361845738 31.0 31.0 34.0 28.0 34.0 3 30.879970688917876 31.0 31.0 34.0 27.0 34.0 4 34.86728999275819 35.0 35.0 37.0 32.0 37.0 5 35.130008832004954 35.0 35.0 37.0 33.0 37.0 6 35.11159485379916 36.0 35.0 37.0 32.0 37.0 7 31.095286803781214 35.0 35.0 37.0 0.0 37.0 8 33.090608634735354 35.0 35.0 37.0 17.0 37.0 9 36.28403598988295 39.0 35.0 39.0 32.0 39.0 10 36.074126523305964 37.0 35.0 39.0 32.0 39.0 11 36.34961201496498 37.0 35.0 39.0 32.0 39.0 12 36.395508356022205 38.0 35.0 39.0 32.0 39.0 13 36.308383098422055 38.0 35.0 39.0 32.0 39.0 14 37.34767155256332 39.0 36.0 40.0 32.0 41.0 15 37.57609384703655 39.0 36.0 41.0 33.0 41.0 16 37.51452123441774 39.0 36.0 41.0 33.0 41.0 17 37.43921711045164 39.0 36.0 40.0 32.0 41.0 18 37.35299224459711 39.0 36.0 40.0 32.0 41.0 19 37.13943178619242 39.0 36.0 40.0 32.0 41.0 20 37.14131852593623 39.0 35.0 40.0 32.0 41.0 21 37.15388318115495 39.0 35.0 40.0 32.0 41.0 22 37.211476019279985 39.0 35.0 40.0 32.0 41.0 23 37.24102563000561 39.0 35.0 40.0 32.0 41.0 24 37.15286245065574 39.0 35.0 40.0 32.0 41.0 25 36.83705273201204 39.0 35.0 40.0 31.0 41.0 26 36.8210799113791 39.0 35.0 40.0 31.0 41.0 27 36.84973342817173 39.0 35.0 40.0 31.0 41.0 28 36.862005832131736 39.0 35.0 40.0 31.0 41.0 29 36.88123209692427 39.0 35.0 40.0 31.0 41.0 30 36.667690978676404 39.0 35.0 40.0 31.0 41.0 31 36.65457835234757 39.0 35.0 40.0 31.0 41.0 32 36.5123400945089 39.0 35.0 40.0 30.0 41.0 33 36.363792647731934 39.0 35.0 40.0 30.0 41.0 34 36.3291157465408 39.0 35.0 40.0 30.0 41.0 35 36.27598188901759 39.0 35.0 40.0 30.0 41.0 36 36.17440308754859 39.0 35.0 40.0 30.0 41.0 37 36.09755175103631 38.0 35.0 40.0 30.0 41.0 38 36.01525938373665 38.0 35.0 40.0 29.0 41.0 39 35.943511699720425 38.0 35.0 40.0 29.0 41.0 40 35.835864386820326 38.0 35.0 40.0 29.0 41.0 41 35.69909509555112 38.0 35.0 40.0 28.0 41.0 42 35.72430176661588 38.0 35.0 40.0 28.0 41.0 43 35.68212948020105 38.0 35.0 40.0 28.0 41.0 44 35.485173620885654 38.0 34.0 40.0 27.0 41.0 45 35.40277380827028 38.0 34.0 40.0 27.0 41.0 46 35.2779911164213 38.0 34.0 40.0 27.0 41.0 47 35.240507743583905 38.0 34.0 40.0 26.0 41.0 48 35.197551106364415 38.0 34.0 40.0 27.0 41.0 49 35.08863378983266 38.0 34.0 40.0 26.0 41.0 50 34.941637853414505 37.0 34.0 40.0 26.0 41.0 51 33.31312573465735 36.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 18.0 9 50.0 10 53.0 11 28.0 12 19.0 13 21.0 14 20.0 15 27.0 16 62.0 17 99.0 18 231.0 19 368.0 20 704.0 21 1032.0 22 1493.0 23 2174.0 24 3109.0 25 4241.0 26 5552.0 27 6569.0 28 7381.0 29 8739.0 30 10590.0 31 13356.0 32 17526.0 33 24285.0 34 37244.0 35 41427.0 36 46473.0 37 67715.0 38 91606.0 39 73135.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.60669427294978 22.309945353312433 23.65215223711892 12.431208136618869 2 33.47093496764821 24.43607326051406 24.54545259190335 17.547539179934372 3 32.7708212905042 23.854149430647272 27.83198990873595 15.543039370112583 4 29.228134341027136 25.029601184477162 27.156803544835856 18.58546092965985 5 25.51331999578814 29.719589215068993 25.523849636727387 19.24324115241548 6 26.430043429396612 35.33876433589125 24.753681613742685 13.477510620969458 7 68.09239437588239 18.105180368451474 10.01390342385243 3.7885218318136986 8 78.28551658633339 7.304132561732706 9.721007493236318 4.689343358697591 9 72.06056477555748 8.25975119962695 12.411653089160273 7.268030935655298 10 40.52901775641287 26.523305963429912 18.858801812817365 14.08887446733985 11 32.263249619106354 25.46325047866888 24.367952930356097 17.905546971868667 12 30.43216654883497 21.953656686429444 29.56723175739707 18.046945007338515 13 24.63506198520263 24.88992227405862 30.382526812978533 20.092488927760215 14 19.150408399645 29.276054951832265 29.36996215775981 22.203574490762925 15 19.044252427726907 26.457334539586082 35.86030389833094 18.63810913435607 16 20.806785386577502 24.338512913852494 34.60942553287504 20.24527616669496 17 20.546337941304774 25.14607190670308 29.60827586799698 24.69931428399516 18 21.84750071451135 26.099541638283196 30.864096717975386 21.188860929230067 19 24.463579261334946 26.87078411442496 27.465171600913713 21.20046502332638 20 26.22804623586826 24.780542942669328 29.152492838769707 19.83891798269271 21 24.763566582787693 26.851658848229192 28.385118393993373 19.999656174989738 22 22.33508755718777 25.675992203767894 27.98133889756808 24.007581341476257 23 22.52247218778003 26.85617155148887 29.07040461756989 21.550951643161213 24 23.01285260866482 24.375259211824144 30.40057762601724 22.2113105534938 25 22.113105534937993 26.702524750028473 28.50094444432506 22.683425270708472 26 20.52291486248074 28.383829050204902 28.637185104640995 22.456070982673367 27 21.972996843256627 28.369431377900217 28.82005703197358 20.83751474686958 28 18.96173442526426 28.14057285544522 30.954995455063145 21.94269726422737 29 19.991920112258864 26.515999681961866 30.363831328045592 23.12824887773368 30 21.058852097225117 28.088354432011826 28.81747834439662 22.035315126366438 31 22.554705782492 27.282729454843956 26.222673970082926 23.939890792581117 32 22.603485955822784 28.10167765115944 27.20429437437816 22.090542018639614 33 21.18692691354735 29.087166086820115 26.756032517250343 22.969874482382192 34 20.553429332141405 27.397695942649985 28.384473722099134 23.664401003109468 35 20.747475572307476 25.716391642473564 27.668887919493372 25.867244865725592 36 21.05562873775392 28.648359417474477 25.940952352300293 24.355059492471305 37 20.615102943356977 29.158079995186448 28.25081174936016 21.976005312096408 38 20.69998474276517 28.243935249154944 26.65460413922334 24.401475868856544 39 21.492286500785426 26.89313274009193 28.00905978902038 23.60552097010227 40 21.662694771496046 26.879164849050074 28.95157009839842 22.506570281055456 41 18.077674367630596 27.491603148577532 28.679733449660795 25.750989034131077 42 20.525063768794872 26.810399846997868 26.969418914243597 25.695117469963662 43 21.769925196571204 26.264577643208487 27.5614426037868 24.4040545564335 44 20.676561663941136 26.938044882057277 27.965007209580683 24.420386244420904 45 20.320917668952386 27.037754135032976 27.100717090037023 25.54061110597761 46 21.15899113146364 28.688758856180147 26.84929505128365 23.30295496107256 47 20.236035869544196 26.74249440747132 30.116707101920476 22.90476262106401 48 20.382806170799373 24.950736322748536 28.57250302458564 26.093954481866454 49 19.249043199463635 25.55952148154197 30.587317584715258 24.60411773427914 50 18.86116560976291 26.027338386128378 29.5545532101437 25.55694279396501 51 18.839676546621597 26.3531125833507 26.94449160099967 27.86271926902803 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 280.0 1 537.0 2 794.0 3 2903.0 4 5012.0 5 3416.5 6 1821.0 7 1683.5 8 1546.0 9 1518.0 10 1490.0 11 1408.0 12 1326.0 13 1318.0 14 1310.0 15 1301.5 16 1293.0 17 1261.5 18 1230.0 19 1313.0 20 1396.0 21 1539.0 22 1682.0 23 2011.0 24 2340.0 25 3039.0 26 4042.0 27 4346.0 28 5608.0 29 6870.0 30 7512.5 31 8155.0 32 9985.5 33 11816.0 34 13235.5 35 14655.0 36 15406.5 37 16158.0 38 17513.5 39 18869.0 40 20416.0 41 21963.0 42 25242.0 43 28521.0 44 31093.0 45 33665.0 46 38049.5 47 42434.0 48 41474.0 49 40514.0 50 38596.0 51 36678.0 52 32466.0 53 28254.0 54 25100.0 55 21946.0 56 20991.5 57 20037.0 58 19611.0 59 19185.0 60 19615.0 61 20045.0 62 18322.5 63 16600.0 64 13760.0 65 10920.0 66 8807.0 67 6694.0 68 5504.5 69 4315.0 70 3529.0 71 2743.0 72 2397.5 73 2052.0 74 1596.0 75 892.5 76 645.0 77 592.0 78 539.0 79 361.5 80 184.0 81 131.0 82 78.0 83 57.0 84 36.0 85 27.5 86 19.0 87 15.0 88 11.0 89 7.5 90 4.0 91 2.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 465353.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.625306160674487 #Duplication Level Percentage of deduplicated Percentage of total 1 74.18579867961056 23.461485960168453 2 9.4370270242287 5.968977377755831 3 3.649039545492241 3.4620597845580185 4 2.066251577242098 2.6138335494103164 5 1.3965007689479236 2.2082382185797718 6 0.9788330794271827 1.8573537490248277 7 0.7807062463735274 1.728305184417964 8 0.5580164815101082 1.4117953656367621 9 0.46390272167003926 1.3203959041426638 >10 6.159561353048953 46.05443704869392 >50 0.27472213641354576 5.221505154087258 >100 0.04420034372990217 2.4174192519396573 >500 0.0020400158644570234 0.36774191983069243 >1k 0.003400026440761705 1.9064515317538526 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2880 0.6188850184698498 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCG 1609 0.3457590259437459 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGC 1581 0.33974208826417795 No Hit GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 1421 0.3053595872380752 Illumina PCR Primer Index 8 (95% over 22bp) GAATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTC 1374 0.2952597275616575 RNA PCR Primer, Index 29 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 694 0.14913409820072074 RNA PCR Primer, Index 29 (96% over 25bp) CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGCT 514 0.11045378454635513 RNA PCR Primer, Index 29 (96% over 26bp) GGTATGAATGGTCACATTGCTTGGGGAAAGTAAGTTGAGAACATTCTCAAG 502 0.10787509696939743 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 478 0.10271772181548201 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13000883200495109 0.0 2 0.0 0.0 0.0 0.8198077588411378 0.0 3 0.0 0.0 0.0 1.0456578124563503 0.0 4 0.0 0.0 0.0 1.3886232601917254 0.0 5 0.0 0.0 0.0 2.533130763098121 0.0 6 0.0 0.0 0.0 3.029743012293893 0.0 7 0.0 0.0 0.0 3.539893371268693 0.0 8 0.0 0.0 0.0 4.464567758239444 0.0 9 0.0 0.0 0.0 4.76176150148382 0.0 10 0.0 0.0 0.0 5.78893871963864 0.0 11 2.1489063141314228E-4 0.0 0.0 6.73402771659364 0.0 12 2.1489063141314228E-4 0.0 0.0 7.824597671015336 0.0 13 2.1489063141314228E-4 0.0 0.0 8.181531009792566 0.0 14 2.1489063141314228E-4 0.0 0.0 8.339045842618399 0.0 15 2.1489063141314228E-4 0.0 0.0 8.650637258167455 0.0 16 2.1489063141314228E-4 0.0 0.0 9.203550852793471 0.0 17 2.1489063141314228E-4 0.0 0.0 9.854024794081052 0.0 18 2.1489063141314228E-4 0.0 0.0 10.562519205850183 0.0 19 2.1489063141314228E-4 0.0 0.0 10.994449374990598 0.0 20 2.1489063141314228E-4 0.0 0.0 11.423585965922644 0.0 21 2.1489063141314228E-4 0.0 0.0 11.943406403311036 0.0 22 2.1489063141314228E-4 0.0 0.0 12.508138982664773 0.0 23 2.1489063141314228E-4 0.0 0.0 13.038489060992408 0.0 24 2.1489063141314228E-4 0.0 0.0 13.476006386549566 0.0 25 2.1489063141314228E-4 0.0 0.0 13.84626294447441 0.0 26 2.1489063141314228E-4 0.0 0.0 14.20598986146001 0.0 27 2.1489063141314228E-4 0.0 0.0 14.569584809811047 0.0 28 2.1489063141314228E-4 0.0 0.0 14.942849836575675 0.0 29 2.1489063141314228E-4 0.0 0.0 15.310312816292148 0.0 30 2.1489063141314228E-4 0.0 0.0 15.736011157121583 0.0 31 2.1489063141314228E-4 0.0 0.0 16.167726435630584 0.0 32 4.2978126282628456E-4 0.0 0.0 16.57215060395012 0.0 33 4.2978126282628456E-4 0.0 0.0 16.959168631125188 0.0 34 4.2978126282628456E-4 0.0 0.0 17.37283309659549 0.0 35 4.2978126282628456E-4 0.0 0.0 17.79702720300503 0.0 36 4.2978126282628456E-4 0.0 0.0 18.207683199635547 0.0 37 4.2978126282628456E-4 0.0 0.0 18.60737977406399 0.0 38 4.2978126282628456E-4 0.0 0.0 19.011159270489284 0.0 39 4.2978126282628456E-4 0.0 0.0 19.388722109882174 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 30 2.1627056E-6 45.000004 1 ACGCGAA 25 3.887216E-5 45.0 22 GATCGTC 20 7.028956E-4 45.0 41 CGCGGTC 20 7.028956E-4 45.0 31 GACCGGA 20 7.028956E-4 45.0 9 CGACCGT 20 7.028956E-4 45.0 21 CCTCGAG 20 7.028956E-4 45.0 28 CCGTCAA 20 7.028956E-4 45.0 18 CGTTACG 25 3.887216E-5 45.0 25 GTTACGA 25 3.887216E-5 45.0 26 ACGATCA 25 3.887216E-5 45.0 29 TACGATC 25 3.887216E-5 45.0 28 TACGACG 25 3.887216E-5 45.0 1 CCTCATA 20 7.028956E-4 45.0 44 TCGTCTC 20 7.028956E-4 45.0 42 GTCCGAA 20 7.028956E-4 45.0 38 ACTAAAC 20 7.028956E-4 45.0 27 AGTTACG 35 1.2098462E-7 45.0 1 TTACGGA 20 7.028956E-4 45.0 40 TTACGAT 25 3.887216E-5 45.0 27 >>END_MODULE