SRR2936722.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936722.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	315960
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5544	1.7546524876566654	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	1271	0.40226610963413095	No Hit
GCCCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTC	1184	0.3747309786048867	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCG	862	0.2728193442207874	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGC	822	0.26015951386251424	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTC	679	0.21490062033168755	No Hit
CCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	646	0.20445626028611213	No Hit
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	589	0.18641600202557287	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	555	0.17565514622104064	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	415	0.13134573996708446	No Hit
GCCCCTGGGAATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATG	410	0.1297632611723003	No Hit
GCCCCTGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGT	371	0.11741992657298393	No Hit
TCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	351	0.11109001139384732	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	338	0.10697556652740853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAT	30	2.1604883E-6	45.000004	43
ACACGAC	30	2.1604883E-6	45.000004	26
CACGACC	30	2.1604883E-6	45.000004	27
GTCAAGC	30	2.1604883E-6	45.000004	16
AACCGAT	20	7.025514E-4	45.0	25
TTGGCGG	25	3.884364E-5	45.0	2
AACCCGA	20	7.025514E-4	45.0	27
GGCGTTA	20	7.025514E-4	45.0	19
GGCGTAA	25	3.884364E-5	45.0	8
TCGGGCA	20	7.025514E-4	45.0	5
CGCGCGC	20	7.025514E-4	45.0	32
TAAGTAG	20	7.025514E-4	45.0	1
CACGAGT	20	7.025514E-4	45.0	39
ATCGTAG	20	7.025514E-4	45.0	1
ACGGCCT	25	3.884364E-5	45.0	16
CTCGGCG	25	3.884364E-5	45.0	14
GCGATTA	20	7.025514E-4	45.0	9
GCGATCC	20	7.025514E-4	45.0	25
GCGATCA	20	7.025514E-4	45.0	9
TCCGTCA	20	7.025514E-4	45.0	29