SRR2936719.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936719.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	501149
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4908	0.9793494549525191	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCG	2142	0.4274177939095958	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGC	1954	0.389904000606606	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC	1563	0.311883292194537	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	1303	0.2600025142223171	TruSeq Adapter, Index 21 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	868	0.17320198184571856	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT	558	0.11134413118653334	TruSeq Adapter, Index 14 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAGTCG	20	7.0294726E-4	45.000004	27
CACGACC	40	6.8012014E-9	45.000004	27
AATGCGA	20	7.0294726E-4	45.000004	37
GTATGCG	30	2.1630422E-6	45.000004	1
GCAATCG	30	2.1630422E-6	45.000004	21
CGGTCAG	20	7.0294726E-4	45.000004	28
CGCAATC	30	2.1630422E-6	45.000004	20
TAAGCGA	20	7.0294726E-4	45.000004	1
CATGCGG	25	3.8876457E-5	45.0	2
GGGTTAC	25	3.8876457E-5	45.0	7
GCGTAAG	25	3.8876457E-5	45.0	1
CGTTTTT	2395	0.0	43.121086	1
TGCACGG	70	0.0	41.785713	2
ACAACGA	110	0.0	40.909092	13
TATGCGG	50	1.0786607E-9	40.5	2
ACACGAC	45	1.9244908E-8	40.0	26
GACGGGT	90	0.0	40.0	4
TACGGGA	85	0.0	39.705883	4
AAGGTCG	40	3.453024E-7	39.375004	1
CGTTTTA	225	0.0	39.0	1