SRR2936718.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936718.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	653007
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	6963	1.0662979110484267	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	6009	0.9202045307324423	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC	5968	0.9139258844085898	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5595	0.8568055166330529	No Hit
GAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	4772	0.7307731770103536	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	2111	0.32327371682079975	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	1286	0.19693510176766862	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTC	940	0.14394945230296152	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTA	731	0.11194366982283499	No Hit
GAATCTATCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	728	0.11148425667718723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGCG	25	3.888948E-5	45.000004	1
CTACGCG	25	3.888948E-5	45.000004	1
CGACGGT	35	1.2108467E-7	45.0	28
CGCTAAG	20	7.031046E-4	45.0	2
TGTCGCG	20	7.031046E-4	45.0	1
TATTGCG	60	0.0	44.999996	1
CGTTTTT	3020	0.0	43.36093	1
GCGATTT	65	0.0	41.53846	9
GTTTGCG	55	6.002665E-11	40.909092	1
TCGCTCA	45	1.9261279E-8	40.0	11
GGACGAT	45	1.9261279E-8	40.0	8
GGATCGC	85	0.0	39.705883	8
CTATGCG	40	3.4551704E-7	39.375	1
CTCACGA	40	3.4551704E-7	39.375	24
CGGTCTA	40	3.4551704E-7	39.375	31
GCGGGCT	75	0.0	39.0	5
TACGGCT	745	0.0	38.959732	7
AACGGCT	110	0.0	38.86364	7
ACCGGCG	35	6.244145E-6	38.571426	20
CCAGCGG	35	6.244145E-6	38.571426	2