SRR2936717.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936717.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591106
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4350	0.7359086187587336	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGC	2437	0.41227800090000777	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCG	2352	0.397898177315067	No Hit
GCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	2242	0.3792889938522025	TruSeq Adapter, Index 14 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTC	2067	0.34968347470673616	No Hit
CCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	1169	0.19776486789171485	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGCT	885	0.14971933967850098	Illumina Paired End PCR Primer 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	708	0.11977547174280079	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGAAGG	35	1.210592E-7	45.000004	2
CGGGTTA	20	7.0305023E-4	45.0	6
GATAACG	20	7.0305023E-4	45.0	1
ACGTTAG	20	7.0305023E-4	45.0	1
CGCGCTC	20	7.0305023E-4	45.0	27
CGTTACG	20	7.0305023E-4	45.0	20
CTAACGG	20	7.0305023E-4	45.0	2
CGGGCTT	20	7.0305023E-4	45.0	6
CGGGCTA	40	6.8048394E-9	45.0	6
GTCGTTG	20	7.0305023E-4	45.0	1
TCCGTTA	20	7.0305023E-4	45.0	18
CAAGCGT	20	7.0305023E-4	45.0	18
TTACCGG	20	7.0305023E-4	45.0	2
GCCGTTG	20	7.0305023E-4	45.0	1
TAATGCG	25	3.888498E-5	45.0	1
GTACGAG	25	3.888498E-5	45.0	1
CGTTTTT	2875	0.0	43.591305	1
ATAGCGG	65	0.0	41.538464	2
TACGGGC	60	3.6379788E-12	41.250004	4
CCGTTGG	40	3.4544246E-7	39.375	2