SRR2936715.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936715.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	542360
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCG	6946	1.2806991666052068	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGC	6934	1.2784866140570839	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTC	5885	1.08507264547533	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4075	0.7513459694667749	No Hit
GCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	2352	0.43366029943211154	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCT	1418	0.2614499594365366	No Hit
GAACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCT	1367	0.25204661110701376	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTC	1067	0.19673279740393834	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTA	911	0.16796961427833912	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCG	738	0.13607198170956558	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	687	0.12666863338004278	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGC	683	0.12593111586400177	No Hit
CTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCT	597	0.11007448926912014	Illumina Single End Adapter 2 (95% over 22bp)
GAATCTATCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTC	586	0.10804631610000738	No Hit
CCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	549	0.10122427907662808	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATT	25	3.888072E-5	45.0	12
CAGCGCG	20	7.029988E-4	45.0	1
CGACGGT	40	6.8030204E-9	45.0	28
GCGGTCT	20	7.029988E-4	45.0	36
ACGTTAC	20	7.029988E-4	45.0	36
GGCACGT	20	7.029988E-4	45.0	8
CGGATAG	25	3.888072E-5	45.0	2
CGGTCTA	55	1.8189894E-12	45.0	31
CCAACGG	25	3.888072E-5	45.0	2
GATTACC	20	7.029988E-4	45.0	32
CGAATAT	120	0.0	43.124996	14
CGTTTTT	2025	0.0	43.0	1
TACGGCT	805	0.0	42.763973	7
AGGCGAT	100	0.0	42.75	7
CTACGAA	130	0.0	41.53846	11
ACGGCTG	900	0.0	41.5	8
TGATACC	865	0.0	40.578033	4
AAACGGC	95	0.0	40.263157	6
GATACCT	900	0.0	39.0	5
CGGCTGT	960	0.0	38.67187	9