SRR2936714.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936714.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	528640
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4009	0.7583610774818402	No Hit
GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	1630	0.30833837772397094	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	1054	0.19937953995157387	TruSeq Adapter, Index 16 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	804	0.15208837772397094	No Hit
CTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT	732	0.1384685230024213	TruSeq Adapter, Index 19 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	20	7.0298254E-4	45.0	26
ATGGGCC	55	1.8189894E-12	45.0	5
GTCGACT	20	7.0298254E-4	45.0	43
GCGAATG	25	3.887937E-5	45.0	1
GCGCGTT	25	3.887937E-5	45.0	1
TTAGCGT	20	7.0298254E-4	45.0	14
ACGTTAG	20	7.0298254E-4	45.0	1
ACCGAAC	20	7.0298254E-4	45.0	24
CACGACA	20	7.0298254E-4	45.0	35
AGGCGAT	105	0.0	45.0	7
TCGATAG	25	3.887937E-5	45.0	1
CCCGTGC	20	7.0298254E-4	45.0	44
CAAGGCG	25	3.887937E-5	45.0	5
AACGCAT	20	7.0298254E-4	45.0	22
TTGCGAA	20	7.0298254E-4	45.0	10
TATAGCG	20	7.0298254E-4	45.0	1
CCGGTTG	20	7.0298254E-4	45.0	2
TAGTGCG	25	3.887937E-5	45.0	1
GCTCGAT	20	7.0298254E-4	45.0	12
CGTTTTA	100	0.0	45.0	1