FastQCFastQC Report
Sat 14 Jan 2017
SRR2936714.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936714.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528640
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40090.7583610774818402No Hit
GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC16300.30833837772397094TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC10540.19937953995157387TruSeq Adapter, Index 16 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT8040.15208837772397094No Hit
CTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT7320.1384685230024213TruSeq Adapter, Index 19 (95% over 22bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGACG207.0298254E-445.026
ATGGGCC551.8189894E-1245.05
GTCGACT207.0298254E-445.043
GCGAATG253.887937E-545.01
GCGCGTT253.887937E-545.01
TTAGCGT207.0298254E-445.014
ACGTTAG207.0298254E-445.01
ACCGAAC207.0298254E-445.024
CACGACA207.0298254E-445.035
AGGCGAT1050.045.07
TCGATAG253.887937E-545.01
CCCGTGC207.0298254E-445.044
CAAGGCG253.887937E-545.05
AACGCAT207.0298254E-445.022
TTGCGAA207.0298254E-445.010
TATAGCG207.0298254E-445.01
CCGGTTG207.0298254E-445.02
TAGTGCG253.887937E-545.01
GCTCGAT207.0298254E-445.012
CGTTTTA1000.045.01