Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936714.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 528640 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4009 | 0.7583610774818402 | No Hit |
GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC | 1630 | 0.30833837772397094 | TruSeq Adapter, Index 16 (95% over 22bp) |
CCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC | 1054 | 0.19937953995157387 | TruSeq Adapter, Index 16 (95% over 22bp) |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 804 | 0.15208837772397094 | No Hit |
CTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT | 732 | 0.1384685230024213 | TruSeq Adapter, Index 19 (95% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGACG | 20 | 7.0298254E-4 | 45.0 | 26 |
ATGGGCC | 55 | 1.8189894E-12 | 45.0 | 5 |
GTCGACT | 20 | 7.0298254E-4 | 45.0 | 43 |
GCGAATG | 25 | 3.887937E-5 | 45.0 | 1 |
GCGCGTT | 25 | 3.887937E-5 | 45.0 | 1 |
TTAGCGT | 20 | 7.0298254E-4 | 45.0 | 14 |
ACGTTAG | 20 | 7.0298254E-4 | 45.0 | 1 |
ACCGAAC | 20 | 7.0298254E-4 | 45.0 | 24 |
CACGACA | 20 | 7.0298254E-4 | 45.0 | 35 |
AGGCGAT | 105 | 0.0 | 45.0 | 7 |
TCGATAG | 25 | 3.887937E-5 | 45.0 | 1 |
CCCGTGC | 20 | 7.0298254E-4 | 45.0 | 44 |
CAAGGCG | 25 | 3.887937E-5 | 45.0 | 5 |
AACGCAT | 20 | 7.0298254E-4 | 45.0 | 22 |
TTGCGAA | 20 | 7.0298254E-4 | 45.0 | 10 |
TATAGCG | 20 | 7.0298254E-4 | 45.0 | 1 |
CCGGTTG | 20 | 7.0298254E-4 | 45.0 | 2 |
TAGTGCG | 25 | 3.887937E-5 | 45.0 | 1 |
GCTCGAT | 20 | 7.0298254E-4 | 45.0 | 12 |
CGTTTTA | 100 | 0.0 | 45.0 | 1 |