SRR2936712.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936712.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	261056
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	7656	2.9327040941407208	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	7463	2.858773596469723	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	6272	2.402549644520716	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3985	1.5264924000980633	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2650	1.0151078695758764	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCT	1652	0.6328144152978671	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT	1126	0.4313250796763913	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTA	988	0.3784628585437607	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTC	987	0.37807979897033583	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	843	0.32291922039715615	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	784	0.3003187055650895	No Hit
GAATCTATCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	751	0.28767773964206916	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTT	659	0.2524362588869821	No Hit
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	539	0.20646911007599902	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	512	0.19612650159352782	Illumina Single End Adapter 1 (95% over 21bp)
GATATGGGGAGATCATGTGTTTAATAAATTGGCTATAATTTTAATATCTGT	430	0.16471561657268938	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT	336	0.12870801667075263	No Hit
ATGCAAGGGATGGTTTTATTTTCTACAATTTTTGTGTATTTGCTTTTTTGA	306	0.11721622946800686	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	293	0.1122364550134837	No Hit
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	293	0.1122364550134837	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGT	288	0.11032115714635941	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTAT	286	0.10955503799950969	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGACC	20	7.0232595E-4	45.000004	10
CGTTATA	20	7.0232595E-4	45.000004	15
GTTACCG	45	3.8198777E-10	45.000004	10
TGACCAC	20	7.0232595E-4	45.000004	36
TCAGCGA	25	3.8824965E-5	45.000004	26
CGTAGCG	25	3.8824965E-5	45.000004	2
GCGATTT	20	7.0232595E-4	45.000004	9
CCCTTTG	20	7.0232595E-4	45.000004	18
TAGATTC	25	3.8824965E-5	45.000004	20
AACCTCC	20	7.0232595E-4	45.000004	26
CGAGAAT	40	6.7793735E-9	45.000004	6
GCGGATG	25	3.8824965E-5	45.000004	5
GACGCAT	20	7.0232595E-4	45.000004	10
ATACGGT	40	6.7793735E-9	45.000004	28
CTCTCGA	20	7.0232595E-4	45.000004	11
TTCGCGG	20	7.0232595E-4	45.000004	2
AGTACTT	20	7.0232595E-4	45.000004	42
AGTGTGC	20	7.0232595E-4	45.000004	28
CGAAGTA	45	3.8198777E-10	45.000004	15
GCGACCT	75	0.0	45.0	11

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content