SRR2936710.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936710.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361263
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2948	0.8160259976803603	No Hit
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	547	0.15141323634028395	TruSeq Adapter, Index 20 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	369	0.10214165303393927	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGA	25	3.8854778E-5	45.0	6
TCGTTGA	20	7.0268573E-4	45.0	24
CCGATAA	20	7.0268573E-4	45.0	11
GCGCGCC	25	3.8854778E-5	45.0	16
CGGTTTA	20	7.0268573E-4	45.0	1
GACCGTT	25	3.8854778E-5	45.0	39
TCGATAG	20	7.0268573E-4	45.0	2
TAGCCGT	25	3.8854778E-5	45.0	44
CTGCGCG	20	7.0268573E-4	45.0	1
ATCCGGC	20	7.0268573E-4	45.0	18
TACGCGG	20	7.0268573E-4	45.0	2
TGCGCGC	25	3.8854778E-5	45.0	15
TACGATG	25	3.8854778E-5	45.0	1
TACGACC	20	7.0268573E-4	45.0	32
TCGTACA	20	7.0268573E-4	45.0	34
TAGATCG	20	7.0268573E-4	45.0	1
TATAGCG	20	7.0268573E-4	45.0	1
CGTAAAG	20	7.0268573E-4	45.0	28
ACGTACT	20	7.0268573E-4	45.0	30
CGCACGG	25	3.8854778E-5	45.0	2