SRR2936707.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936707.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	359920
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5681	1.578406312513892	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	824	0.22893976439208713	TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	695	0.19309846632585018	TruSeq Adapter, Index 20 (95% over 22bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	595	0.16531451433651922	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT	442	0.12280506779284285	TruSeq Adapter, Index 22 (95% over 22bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	418	0.11613691931540342	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	391	0.10863525227828408	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	364	0.10113358524116471	TruSeq Adapter, Index 20 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	20	7.026822E-4	45.000004	14
AACCGTC	20	7.026822E-4	45.000004	10
AGTCCGT	20	7.026822E-4	45.000004	33
GTCGACC	20	7.026822E-4	45.000004	38
CCGGCTA	25	3.8854476E-5	45.000004	15
GATCCGC	25	3.8854476E-5	45.000004	17
CGACCTA	20	7.026822E-4	45.000004	12
CCGTCGA	20	7.026822E-4	45.000004	36
ACGATAT	20	7.026822E-4	45.000004	13
AGTTCAC	25	3.8854476E-5	45.000004	41
GTTCACC	20	7.026822E-4	45.000004	42
ATGCGTG	20	7.026822E-4	45.000004	21
CATCGAT	20	7.026822E-4	45.000004	44
CGTCGAC	20	7.026822E-4	45.000004	37
ACCGTTT	25	3.8854476E-5	45.000004	18
ACGTATA	20	7.026822E-4	45.000004	40
ACCGTGC	20	7.026822E-4	45.000004	12
CGGTCTA	25	3.8854476E-5	45.000004	31
AATAGGC	20	7.026822E-4	45.000004	4
ATACGAG	50	2.1827873E-11	45.000004	1