SRR2936704.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936704.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	515842
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1192	0.23107850853555933	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	690	0.1337618883301476	No Hit
GCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC	611	0.11844712140539157	Illumina Single End Adapter 2 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	7.029668E-4	45.0	19
CCTTATC	20	7.029668E-4	45.0	41
TATTCGG	25	3.887806E-5	45.0	12
ACGTGCC	20	7.029668E-4	45.0	45
CGGTCTA	50	2.1827873E-11	45.0	31
GCGTGAT	20	7.029668E-4	45.0	22
GCGTACG	20	7.029668E-4	45.0	1
TACGTCG	20	7.029668E-4	45.0	33
TACCGAA	25	3.887806E-5	45.0	16
AGTAGCG	30	2.1631658E-6	44.999996	1
TCACGAC	55	6.002665E-11	40.909092	25
CACAACG	155	0.0	40.645164	12
CTACGGG	90	0.0	40.0	3
CGACGGT	70	0.0	38.571426	28
ACGACCA	65	9.094947E-12	38.07692	28
TACGGGT	30	1.1390497E-4	37.499996	4
TACGGAA	30	1.1390497E-4	37.499996	5
GCCGATA	30	1.1390497E-4	37.499996	9
ATAACGG	30	1.1390497E-4	37.499996	2
CCGTTAA	30	1.1390497E-4	37.499996	30