SRR2936700.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936700.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	255613
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	5604	2.192376757050698	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	5354	2.094572654755431	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	3930	1.537480488081592	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2272	0.8888436816593835	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	1520	0.5946489419552213	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCT	1059	0.41429817732274965	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTC	772	0.3020190678877835	No Hit
GAACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	693	0.2711129715624792	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTA	580	0.22690551732501865	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	489	0.1913048240895416	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	377	0.14748858626126216	No Hit
GAATCTATCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	305	0.11932100480022534	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	269	0.10523721406970694	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	20	7.0229836E-4	45.000004	16
CGTATAT	20	7.0229836E-4	45.000004	17
CAAGTGA	20	7.0229836E-4	45.000004	5
GCGAACA	20	7.0229836E-4	45.000004	33
GCGCGAC	30	2.1588567E-6	45.000004	9
ACACCCA	35	1.2069722E-7	45.000004	30
CCAATCC	20	7.0229836E-4	45.000004	13
AAGCGGT	20	7.0229836E-4	45.000004	42
GTTACTT	20	7.0229836E-4	45.000004	34
CGTTAAT	20	7.0229836E-4	45.000004	23
ATCCGCC	20	7.0229836E-4	45.000004	18
CCCAATC	20	7.0229836E-4	45.000004	12
CCCGTAA	20	7.0229836E-4	45.000004	17
CCGTAAA	20	7.0229836E-4	45.000004	18
GCACAAT	20	7.0229836E-4	45.000004	42
TGCGATT	20	7.0229836E-4	45.000004	29
GTGTCGG	20	7.0229836E-4	45.000004	2
TTGCGAT	20	7.0229836E-4	45.000004	28
CGAATGG	35	1.2069722E-7	45.000004	2
TCGTATA	20	7.0229836E-4	45.000004	16