##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936698.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 255638 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.897280529498744 31.0 30.0 33.0 28.0 34.0 2 30.9400871544919 31.0 31.0 33.0 28.0 34.0 3 30.671453383299824 31.0 30.0 33.0 27.0 34.0 4 34.661005014903886 35.0 35.0 37.0 32.0 37.0 5 34.9380960577066 35.0 35.0 37.0 32.0 37.0 6 34.91584975629601 35.0 35.0 37.0 32.0 37.0 7 31.06616778413225 35.0 35.0 37.0 0.0 37.0 8 32.96545896932381 35.0 35.0 37.0 17.0 37.0 9 35.996264248664126 38.0 34.0 39.0 32.0 39.0 10 35.83896369084408 37.0 35.0 39.0 32.0 39.0 11 36.14929314108231 37.0 35.0 39.0 32.0 39.0 12 36.20280631205063 37.0 35.0 39.0 32.0 39.0 13 35.930702790664924 37.0 35.0 39.0 31.0 39.0 14 36.87578529013683 39.0 36.0 40.0 31.0 41.0 15 37.02052120576753 39.0 35.0 40.0 31.0 41.0 16 37.14454032655552 39.0 36.0 40.0 32.0 41.0 17 37.016992778851346 38.0 35.0 40.0 32.0 41.0 18 36.917477057401484 38.0 35.0 40.0 32.0 41.0 19 36.668867695725986 38.0 35.0 40.0 31.0 41.0 20 36.55507397178823 38.0 35.0 40.0 31.0 41.0 21 36.705959207942485 38.0 35.0 40.0 31.0 41.0 22 36.81992505026639 38.0 35.0 40.0 32.0 41.0 23 36.912872890571826 38.0 35.0 40.0 32.0 41.0 24 36.798449369812 38.0 35.0 40.0 31.0 41.0 25 36.550023861867174 38.0 35.0 40.0 31.0 41.0 26 36.51630821708822 38.0 35.0 40.0 31.0 41.0 27 36.58575016233893 38.0 35.0 40.0 31.0 41.0 28 36.546076874330105 38.0 35.0 40.0 31.0 41.0 29 36.452444472261554 38.0 35.0 40.0 31.0 41.0 30 36.25785681314984 38.0 35.0 40.0 30.0 41.0 31 36.24997848520173 38.0 35.0 40.0 30.0 41.0 32 35.99218817233744 38.0 35.0 40.0 30.0 41.0 33 35.7632316009357 38.0 35.0 40.0 29.0 41.0 34 35.658352827044496 38.0 35.0 40.0 29.0 41.0 35 35.49989829368091 38.0 35.0 40.0 27.0 41.0 36 35.429916522582715 38.0 35.0 40.0 27.0 41.0 37 35.28251277196661 38.0 34.0 40.0 26.0 41.0 38 35.118331390481856 38.0 34.0 40.0 25.0 41.0 39 34.9109678529796 38.0 34.0 40.0 24.0 41.0 40 34.56727481829775 38.0 34.0 40.0 23.0 41.0 41 34.41635828789147 38.0 33.0 40.0 23.0 41.0 42 34.455765574758054 38.0 33.0 40.0 23.0 41.0 43 34.36836855240614 38.0 33.0 40.0 22.0 41.0 44 34.1231467935127 37.0 33.0 40.0 21.0 41.0 45 34.06648072665253 37.0 33.0 40.0 21.0 41.0 46 33.783651100384134 37.0 33.0 40.0 20.0 41.0 47 33.60292679492094 37.0 33.0 40.0 19.0 41.0 48 33.51584662687081 37.0 33.0 40.0 18.0 41.0 49 33.4062033031083 37.0 32.0 40.0 18.0 41.0 50 33.2300088406262 36.0 32.0 40.0 17.0 41.0 51 31.306992700615716 35.0 28.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 11.0 10 15.0 11 19.0 12 3.0 13 4.0 14 7.0 15 15.0 16 33.0 17 68.0 18 130.0 19 291.0 20 514.0 21 767.0 22 1152.0 23 1703.0 24 2507.0 25 3557.0 26 4472.0 27 4984.0 28 5441.0 29 6138.0 30 7532.0 31 9321.0 32 11723.0 33 15445.0 34 22096.0 35 24167.0 36 24793.0 37 34079.0 38 43767.0 39 30876.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.60868884907565 19.494754301003763 22.74192412708596 15.154632722834632 2 30.457521964653147 30.102723382282758 23.962399956188047 15.47735469687605 3 25.85844045095017 28.59825221602422 31.332587486993326 14.21071984603228 4 25.368685406707925 22.72627700107183 35.51623780502116 16.388799787199087 5 27.064442688489194 25.826755020771557 28.613508163887996 18.49529412685125 6 21.380232985706353 36.4335505675995 28.522363654855692 13.66385279183846 7 61.89377166149007 16.410314585468512 17.461410275467653 4.234503477573757 8 71.15100258959936 8.600051635515847 14.128963612608453 6.119982162276344 9 67.71137311354337 5.052456989962368 15.128814964911319 12.107354931582941 10 38.10935776371275 23.31460893920309 23.05916960702243 15.516863690061728 11 27.892175654636635 24.911006970794638 28.728514540091847 18.468302834476876 12 26.187812453547593 20.28923712437118 34.566066077813154 18.956884344268065 13 20.868180786893966 26.149085816662627 37.20182445489325 15.780908941550162 14 16.734601272111345 30.81779704112847 32.171273441350664 20.276328245409523 15 13.781597415094781 25.038922225960146 44.12293946909301 17.056540889852055 16 16.514759151612825 24.99941323277447 34.479224528434735 24.006603087177965 17 16.98573764463812 24.44746086262606 33.35067556466566 25.21612592807016 18 19.040205290293304 24.76587987701359 34.996753221352066 21.197161611341038 19 18.617341709761458 27.605833248578065 30.75012322111736 23.02670182054311 20 18.447179214357803 27.00420125333479 34.725275585006926 19.82334394730048 21 18.525023666278095 29.751445403265553 33.3612373747252 18.362293555731153 22 17.02289956892168 23.139752305995195 32.96692979916914 26.870418325913985 23 14.511927021804269 28.569305032898086 34.34583277916429 22.57293516613336 24 19.72750530046394 24.086794608000375 32.14193508007417 24.04376501146152 25 16.83317816600036 31.172204445348502 29.71584819158341 22.27876919706773 26 15.074050023861869 25.169575728178128 31.85989563366949 27.896478614290523 27 17.974636008731096 27.18531673694834 32.261244415931905 22.578802838388658 28 14.024127868313787 24.011688403132556 36.16442000015647 25.799763728397185 29 16.688833428520017 24.374701726660355 32.16853519429819 26.767929650521438 30 17.68203475226688 27.389902909583082 34.44910381085754 20.478958527292498 31 21.425218472996974 25.7536047066555 27.692674797956485 25.128502022391036 32 20.259116406793982 30.700834774172854 27.922296372213832 21.11775244681933 33 18.841877968064217 27.206831535217766 27.272940642627464 26.67834985409055 34 20.421455339190576 24.15877138766537 29.400558602398704 26.01921467074535 35 15.999186349447264 25.430882732614084 32.418498032373904 26.151432885564745 36 19.732199438268175 24.265563022711802 28.93896838498189 27.06326915403813 37 16.20768430358554 27.916037521808185 34.535554182085605 21.340723992520676 38 16.17639005155728 28.939359563132243 27.958284762046333 26.925965623264148 39 21.56173964747025 26.36775440271008 28.000140824134128 24.070365125685537 40 20.808721708040277 24.663782379771394 32.5874869933265 21.940008918861828 41 18.67562725416409 23.459344854833788 28.959309648800257 28.90571824220186 42 18.53636783263834 21.68496076483152 34.37790938749325 25.400762015036886 43 20.42106416104022 22.815856797502718 28.510628310345098 28.25245073111196 44 19.704425789593095 23.920152715949897 30.119935220898302 26.255486273558702 45 18.097857126092364 24.557381922875315 28.148788521268358 29.195972429763962 46 23.448391866623897 25.32995876982295 28.70074089141677 22.52090847213638 47 16.857822389472613 22.609705912266563 36.398344534067704 24.134127164193117 48 18.532456051134808 24.62701163363819 30.900726809003352 25.939805506223646 49 18.051698104350685 21.38375358905953 35.1821716646195 25.382376641970282 50 19.188070631126827 21.65092826575079 33.25014278002488 25.910858323097507 51 18.318872781041943 21.598510393603455 29.497961961836662 30.584654863517947 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 89.0 1 222.5 2 356.0 3 2663.5 4 4971.0 5 3172.5 6 1374.0 7 1280.0 8 1186.0 9 1201.5 10 1217.0 11 1215.0 12 1213.0 13 1189.5 14 1166.0 15 1138.5 16 1111.0 17 1068.0 18 1025.0 19 942.0 20 859.0 21 863.0 22 867.0 23 920.0 24 973.0 25 1103.5 26 1394.0 27 1554.0 28 1974.5 29 2395.0 30 2967.5 31 3540.0 32 4581.0 33 5622.0 34 6670.5 35 7719.0 36 7892.5 37 8066.0 38 8571.5 39 9077.0 40 10683.0 41 12289.0 42 13919.0 43 15549.0 44 19040.0 45 22531.0 46 32316.0 47 42101.0 48 35879.0 49 29657.0 50 27291.0 51 24925.0 52 20625.0 53 16325.0 54 13487.0 55 10649.0 56 9291.0 57 7933.0 58 7072.5 59 6212.0 60 5253.5 61 4295.0 62 3636.5 63 2978.0 64 2357.5 65 1737.0 66 1484.5 67 1232.0 68 923.0 69 614.0 70 486.5 71 359.0 72 345.5 73 332.0 74 245.0 75 97.0 76 36.0 77 35.0 78 34.0 79 26.5 80 19.0 81 20.5 82 22.0 83 17.5 84 13.0 85 12.0 86 11.0 87 9.5 88 8.0 89 5.0 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 255638.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.591078973796655 #Duplication Level Percentage of deduplicated Percentage of total 1 76.53994010890767 31.068387536103376 2 10.342948649761558 8.396628909287896 3 3.7851248036127148 4.6092689948736085 4 1.9117618307242783 3.1040190180007703 5 1.22040881357919 2.4768855266155185 6 0.8828359574666359 2.1501158442261357 7 0.6141891764141167 1.7451420955273578 8 0.5123235624807366 1.6636612947833942 9 0.4264369528988707 1.5578582429216938 >10 3.6391949708968996 30.24263754093528 >50 0.08888264335920437 2.312262137836584 >100 0.023968353265403426 1.8854016835690661 >500 0.006990769702409333 1.8752672948162759 >1k 0.00499340693029238 6.912463880503056 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 4166 1.6296481743715723 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCG 4099 1.6034392382979057 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTC 3588 1.403547203467403 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3560 1.3925942152575126 No Hit GCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 1639 0.6411409884289504 TruSeq Adapter, Index 13 (96% over 25bp) GAATGACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCT 873 0.3414985252583732 No Hit GAACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCT 761 0.29768657241881097 RNA PCR Primer, Index 13 (95% over 23bp) GAATGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTT 720 0.28164826825432837 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTC 676 0.2644364296387861 No Hit CCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 576 0.2253186146034627 TruSeq Adapter, Index 13 (96% over 25bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTA 516 0.2018479255822687 No Hit CTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGCT 504 0.1971537877780299 Illumina PCR Primer Index 4 (95% over 23bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 419 0.163903644998005 No Hit TCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 409 0.15999186349447264 TruSeq Adapter, Index 13 (96% over 25bp) GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 316 0.12361229551162191 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCG 264 0.10327103169325373 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2773453086004428 0.0 2 0.0 0.0 0.0 1.8373637722091394 0.0 3 0.0 0.0 0.0 2.2895657140174777 0.0 4 0.0 0.0 0.0 3.2162667522042887 0.0 5 0.0 0.0 0.0 6.348821380232986 0.0 6 0.0 0.0 0.0 7.604503242866866 0.0 7 0.0 0.0 0.0 8.825761428269663 0.0 8 0.0 0.0 0.0 10.64239275851008 0.0 9 0.0 0.0 0.0 11.148577285067166 0.0 10 0.0 0.0 0.0 14.37149406582746 0.0 11 0.0 0.0 0.0 16.076248445066852 0.0 12 0.0 0.0 0.0 19.468154186779742 0.0 13 0.0 0.0 0.0 20.21530445395442 0.0 14 0.0 0.0 0.0 20.578708955632575 0.0 15 0.0 0.0 0.0 21.194423364288564 0.0 16 0.0 0.0 0.0 22.119950868024315 0.0 17 0.0 0.0 0.0 23.193734890743944 0.0 18 0.0 0.0 0.0 24.519437642291052 0.0 19 0.0 0.0 0.0 25.304532190049994 0.0 20 0.0 0.0 0.0 25.982052746461793 0.0 21 0.0 0.0 0.0 26.816826919315595 0.0 22 0.0 0.0 0.0 27.764651577621482 0.0 23 0.0 0.0 0.0 28.648323019269437 0.0 24 0.0 0.0 0.0 29.292984611051565 0.0 25 0.0 0.0 0.0 29.79916913760865 0.0 26 0.0 0.0 0.0 30.311612514571387 0.0 27 0.0 0.0 0.0 30.851047183908495 0.0 28 0.0 0.0 0.0 31.347843434857104 0.0 29 0.0 0.0 0.0 31.91857235622247 0.0 30 3.911781503532339E-4 0.0 0.0 32.53506912117917 0.0 31 3.911781503532339E-4 0.0 0.0 33.05181545779579 0.0 32 3.911781503532339E-4 0.0 0.0 33.55878234065358 0.0 33 3.911781503532339E-4 0.0 0.0 34.04775502859512 0.0 34 3.911781503532339E-4 0.0 0.0 34.575454353421634 0.0 35 3.911781503532339E-4 0.0 0.0 35.17513045791314 0.0 36 3.911781503532339E-4 0.0 0.0 35.63945892238243 0.0 37 3.911781503532339E-4 0.0 0.0 36.15268465564587 0.0 38 3.911781503532339E-4 0.0 0.0 36.64400441248954 0.0 39 3.911781503532339E-4 0.0 0.0 37.31213669329286 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 30 2.1588567E-6 45.000004 6 AACCGGA 20 7.0229836E-4 45.000004 36 ACTGCCG 20 7.0229836E-4 45.000004 1 TTGTGCG 20 7.0229836E-4 45.000004 1 CGACGGT 80 0.0 45.000004 28 GCGCGAC 20 7.0229836E-4 45.000004 9 CGTGAGT 30 2.1588567E-6 45.000004 32 CGCATGG 20 7.0229836E-4 45.000004 2 GGCCGCA 20 7.0229836E-4 45.000004 37 TTGTCGC 30 2.1588567E-6 45.000004 38 GTTAGTA 20 7.0229836E-4 45.000004 34 ATTCGTA 30 2.1588567E-6 45.000004 32 ATCGTGA 30 2.1588567E-6 45.000004 30 GCCGCAC 20 7.0229836E-4 45.000004 38 AAACGTA 20 7.0229836E-4 45.000004 12 ACAGCGG 20 7.0229836E-4 45.000004 2 CGTACAT 30 2.1588567E-6 45.000004 35 TCGTACA 30 2.1588567E-6 45.000004 34 TGGATCG 20 7.0229836E-4 45.000004 2 ACGTATA 20 7.0229836E-4 45.000004 14 >>END_MODULE