SRR2936696.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936696.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380564
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1485	0.3902103194206493	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG	825	0.21678351078924965	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC	743	0.19523654365625756	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	714	0.1876162747921506	RNA PCR Primer, Index 24 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTC	710	0.18656520322468756	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	662	0.17395234441513122	RNA PCR Primer, Index 3 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	556	0.14609894787736097	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	538	0.14136912582377734	No Hit
CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT	421	0.11062528247548375	TruSeq Adapter, Index 3 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	25	3.8858714E-5	45.0	25
CTTGTCG	20	7.0273323E-4	45.0	42
TCCATTA	20	7.0273323E-4	45.0	18
AATTTCG	20	7.0273323E-4	45.0	31
CGACGGT	25	3.8858714E-5	45.0	28
ACGTTAC	20	7.0273323E-4	45.0	16
TTTCGAC	25	3.8858714E-5	45.0	24
CATTGCG	20	7.0273323E-4	45.0	14
CTAAGTA	20	7.0273323E-4	45.0	41
CGACACC	20	7.0273323E-4	45.0	23
TCTAGCG	20	7.0273323E-4	45.0	21
ACCTCCG	20	7.0273323E-4	45.0	26
AAGCCGT	25	3.8858714E-5	45.0	32
ACTACGG	25	3.8858714E-5	45.0	2
TTAACGG	40	6.7939254E-9	45.0	2
GCGATAC	20	7.0273323E-4	45.0	9
CACGTTA	20	7.0273323E-4	45.0	15
CGGTAAC	20	7.0273323E-4	45.0	22
CCGCCTA	20	7.0273323E-4	45.0	42
TTCGACG	25	3.8858714E-5	45.0	25