SRR2936695.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936695.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	409364
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1232	0.30095465160590573	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	774	0.18907378274591805	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	669	0.1634242385749602	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	508	0.12409493751282477	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	484	0.11823218455946298	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	459	0.11212515023304444	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	411	0.10039964432632083	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTT	410	0.10015536295326409	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCAAGCG	30	2.1620635E-6	45.000004	17
CGGGTAC	35	1.2093733E-7	45.0	6
TCCGCGC	20	7.027959E-4	45.0	41
ACGCATT	20	7.027959E-4	45.0	43
ATTACTC	20	7.027959E-4	45.0	28
TAAGTCG	20	7.027959E-4	45.0	35
TTCCGCG	20	7.027959E-4	45.0	40
ACGGATA	20	7.027959E-4	45.0	15
CCGAATT	20	7.027959E-4	45.0	23
CGGTCTA	25	3.886391E-5	45.0	31
TCCCCCG	20	7.027959E-4	45.0	38
ATCGGAA	20	7.027959E-4	45.0	18
TACGAAT	65	0.0	41.53846	12
CGTTTTT	710	0.0	41.514084	1
GCTACGA	60	3.6379788E-12	41.250004	10
CGTTTTA	60	3.6379788E-12	41.250004	1
ACGTCAT	40	3.4509503E-7	39.375	35
CGCATGG	35	6.238437E-6	38.571426	2
TAGGCTC	35	6.238437E-6	38.571426	41
CGATGCA	35	6.238437E-6	38.571426	10