SRR2936693.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936693.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	181036
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3036	1.677014516449767	No Hit
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	474	0.2618263770741731	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC	380	0.20990300271769152	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCG	339	0.18725557347709848	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGC	299	0.16516052055944674	No Hit
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT	259	0.143065467641795	No Hit
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	249	0.13754170441238206	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTT	230	0.1270465542764975	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	202	0.11158001723414128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCC	30	2.1553406E-6	45.000004	5
CGGGCAT	35	1.2043529E-7	45.000004	6
GGAACGG	30	2.1553406E-6	45.000004	2
GAACCCC	30	2.1553406E-6	45.000004	18
CTTCGAG	20	7.017528E-4	45.0	30
CGGGTAA	25	3.8777496E-5	45.0	6
AGATCCA	20	7.017528E-4	45.0	30
TCACCGG	20	7.017528E-4	45.0	2
TGCTTAG	25	3.8777496E-5	45.0	1
ACTGATC	20	7.017528E-4	45.0	39
CTATCTC	20	7.017528E-4	45.0	5
TGAAGCG	20	7.017528E-4	45.0	1
TATGGGT	20	7.017528E-4	45.0	4
AGCTTCG	20	7.017528E-4	45.0	28
TAGCGGG	20	7.017528E-4	45.0	3
GACCGAC	20	7.017528E-4	45.0	9
GTGATTC	20	7.017528E-4	45.0	8
CGATTGG	20	7.017528E-4	45.0	2
TGACGTG	20	7.017528E-4	45.0	20
TACGGGC	20	7.017528E-4	45.0	4