SRR2936691.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936691.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	590117
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG	1716	0.29078979253266724	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC	1701	0.28824792371682223	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1650	0.27960556974294926	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	1413	0.23944404245259837	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	1261	0.21368643845203578	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	636	0.10777523779182771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAACGG	25	3.8884897E-5	45.000004	2
CTACGAA	105	0.0	45.000004	11
TCGTACG	50	2.1827873E-11	45.000004	30
CGATTCG	20	7.0304936E-4	45.0	10
TATGCGA	20	7.0304936E-4	45.0	37
TCCCGAT	20	7.0304936E-4	45.0	45
GCGGACT	20	7.0304936E-4	45.0	24
CCAGTCG	20	7.0304936E-4	45.0	28
CGTTTTA	70	0.0	41.785717	1
CGACGGT	60	3.6379788E-12	41.249996	28
TACGAAT	115	0.0	41.086956	12
GCTACGA	115	0.0	41.086956	10
TCGTTCA	50	1.0804797E-9	40.500004	16
GCCGATA	50	1.0804797E-9	40.500004	9
CGGTCTA	50	1.0804797E-9	40.500004	31
CGTTAGG	45	1.9255822E-8	40.0	2
TACGATG	35	6.2431227E-6	38.57143	1
AACGGGA	175	0.0	38.571426	4
CACAACG	275	0.0	38.454544	12
AGGCGAT	100	0.0	38.250004	7