SRR2936690.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936690.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	463255
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG	5672	1.2243796613096458	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC	5242	1.1315582130791895	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	5087	1.0980993189496067	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2807	0.6059297794950945	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	1589	0.3430076307864999	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT	1074	0.2318377567430465	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT	1044	0.22536184175022395	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTC	818	0.17657661547096093	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTA	729	0.1573647343255874	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT	573	0.12368997636291028	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG	570	0.12304238486362802	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC	524	0.11311264854130015	No Hit
GAATCTATCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	519	0.11203332937582973	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	472	0.10188772922040776	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGA	20	7.02892E-4	45.000004	18
ACCGGGT	20	7.02892E-4	45.000004	4
ATCAGCT	20	7.02892E-4	45.000004	16
CGCGATC	20	7.02892E-4	45.000004	34
ATCCGCG	20	7.02892E-4	45.000004	43
CCGCGAT	20	7.02892E-4	45.000004	33
AATCGTC	20	7.02892E-4	45.000004	14
GTAAATC	20	7.02892E-4	45.000004	13
TGCAACG	20	7.02892E-4	45.000004	1
GGCCGAT	35	1.209828E-7	45.0	8
ACGGGTA	25	3.8871876E-5	45.0	5
AACGGCT	70	0.0	45.0	7
GACGGTC	25	3.8871876E-5	45.0	29
CCCGCGA	25	3.8871876E-5	45.0	32
CGTTTTT	1555	0.0	41.816723	1
ACGGCTG	630	0.0	41.785713	8
TACGGCT	555	0.0	41.756756	7
AACACGT	60	3.6379788E-12	41.250004	41
CGTCATA	55	6.002665E-11	40.909092	38
AAACGGC	90	0.0	40.0	6