SRR2936688.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936688.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	265919
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	4421	1.6625363362527685	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	4360	1.6395970201452323	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	3567	1.3413859107472577	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	1780	0.6693767651051636	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1778	0.6686246563803263	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCT	888	0.33393627382774455	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTC	657	0.2470677161090407	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCT	616	0.23164948724987683	TruSeq Adapter, Index 27 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	588	0.22111996510215517	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTA	564	0.21209466040410802	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGCT	453	0.17035262617563995	TruSeq Adapter, Index 27 (95% over 24bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	411	0.15455834295405743	No Hit
GAATCTATCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	395	0.14854147315535934	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	382	0.14365276644391714	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTT	295	0.11093603691349621	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	279	0.10491916711479812	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	45	3.8198777E-10	45.000004	13
CGGGTTG	20	7.023496E-4	45.000004	6
CAACGAG	45	3.8198777E-10	45.000004	14
TCCGATG	20	7.023496E-4	45.000004	14
GCGCGAG	20	7.023496E-4	45.000004	1
TCCTCAA	20	7.023496E-4	45.000004	39
TTATCGA	20	7.023496E-4	45.000004	14
CGTTAGG	20	7.023496E-4	45.000004	2
CCCGTTT	20	7.023496E-4	45.000004	30
AGACGCA	20	7.023496E-4	45.000004	36
TCGGAGC	20	7.023496E-4	45.000004	13
GTTAATT	20	7.023496E-4	45.000004	32
CGGGATC	20	7.023496E-4	45.000004	6
CTCGCAG	20	7.023496E-4	45.000004	1
GGTGACG	20	7.023496E-4	45.000004	21
CTCGAAG	20	7.023496E-4	45.000004	1
CAATGTC	20	7.023496E-4	45.000004	13
GGACACG	20	7.023496E-4	45.000004	1
CTCTCGC	20	7.023496E-4	45.000004	45
TCGACGG	20	7.023496E-4	45.000004	17