SRR2936687.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936687.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	497416
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG	2711	0.5450166460266659	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC	2581	0.5188815800054682	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2500	0.5025974234845683	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC	2035	0.40911430271643856	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	1357	0.27280988146742363	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	568	0.11419013461569391	TruSeq Adapter, Index 14 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	563	0.11318493976872476	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCT	549	0.11037039419721117	No Hit
CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT	499	0.10031844572751983	TruSeq Adapter, Index 21 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACGG	20	7.0294226E-4	45.000004	2
AATAGCG	20	7.0294226E-4	45.000004	1
TACGTGA	20	7.0294226E-4	45.000004	23
GATAGCG	20	7.0294226E-4	45.000004	1
TCACGAC	45	3.8380676E-10	45.0	25
CGTAGCT	25	3.8876035E-5	45.0	20
CGGTCTA	45	3.8380676E-10	45.0	31
CGGTAAG	25	3.8876035E-5	45.0	2
TACGGGC	80	0.0	42.187504	4
CGTTTTT	1165	0.0	41.523605	1
TACGGGT	55	6.002665E-11	40.909092	4
CACAACG	55	6.002665E-11	40.909092	12
ATAGCGG	50	1.0786607E-9	40.5	2
ACGGGCT	100	0.0	40.5	5
ACGGGTG	130	0.0	39.80769	5
GCTACGA	75	0.0	39.000004	10
CTTCGAC	35	6.2411455E-6	38.571426	22
CGCGACC	35	6.2411455E-6	38.571426	10
CGGATGG	70	0.0	38.571426	2
TACGGCT	285	0.0	37.894737	7