SRR2936684.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936684.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	377673
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC	2671	0.7072255628546388	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCG	2568	0.6799532929280092	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC	2131	0.5642447302295901	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1748	0.462834250793676	No Hit
GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	1389	0.36777847502998623	TruSeq Adapter, Index 13 (95% over 21bp)
ATGAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC	754	0.1996436070357161	No Hit
CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	638	0.16892920595329822	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT	551	0.14589340514148483	No Hit
GAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT	417	0.11041297630489867	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT	408	0.10802996242781453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAACC	20	7.0272654E-4	45.0	14
GGCGTAC	20	7.0272654E-4	45.0	8
TTACTCC	25	3.8858154E-5	45.0	32
ATACTCG	20	7.0272654E-4	45.0	44
TAGCACG	25	3.8858154E-5	45.0	1
TCGTCAG	20	7.0272654E-4	45.0	1
TACTCGC	20	7.0272654E-4	45.0	45
TGCGTTG	25	3.8858154E-5	45.0	1
CCCGACG	20	7.0272654E-4	45.0	10
CTAAACG	30	2.1616179E-6	44.999996	45
CGACAGG	60	3.6379788E-12	41.249996	2
AATGCGG	55	6.002665E-11	40.909092	2
CGAATAT	55	6.002665E-11	40.909092	14
ACAACGA	215	0.0	40.813953	13
CGTTTTT	1120	0.0	40.78125	1
CGTACGG	50	1.0768417E-9	40.5	31
TGGGCGA	150	0.0	40.5	6
ATGGGCG	80	0.0	39.375	5
TACGGGT	40	3.4500044E-7	39.375	4
GGGCGAT	455	0.0	39.065937	7