SRR2936681.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936681.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1032097
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTC	4164	0.4034504508781636	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3332	0.32283787279683984	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC	2845	0.2756523853862573	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCG	2589	0.2508485152073885	No Hit
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1962	0.19009841129273702	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTT	1470	0.14242847329272346	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCT	1320	0.12789495560979247	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	1068	0.10347864590246848	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	50	2.1827873E-11	45.0	1
TCGGTTA	25	3.890528E-5	45.0	20
TACGGGT	90	0.0	42.500004	4
ACGGGTA	85	0.0	42.35294	5
CGGTCTA	75	0.0	42.000004	31
GCTAGCG	60	3.6379788E-12	41.250004	1
CACAACG	300	0.0	41.250004	12
CGAATAT	110	0.0	40.909092	14
ATTGCGG	105	0.0	40.714287	2
CGTTTTT	1515	0.0	39.504948	1
GTTACGG	105	0.0	38.57143	2
AATTGCG	35	6.24767E-6	38.571426	1
TCACGAC	90	0.0	37.500004	25
GTTTACG	30	1.139841E-4	37.500004	1
GACCGAC	30	1.139841E-4	37.500004	9
CTCGAAC	30	1.139841E-4	37.500004	13
TAATCGC	30	1.139841E-4	37.500004	36
AACGAGC	335	0.0	36.9403	15
TATTGCG	55	2.748493E-9	36.81818	1
CGGGTAT	105	0.0	36.42857	6